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Add command line flags and update README
* Add command line flags for various configuration options in `cmd/root.go` * Bind each flag to its corresponding Viper configuration in the `init` function * Update `setDefaultConfigValues` function to set default values for new configuration options * Add single letter flag aliases for each command line flag * Update `README.md` to include new command line flags and mention `--help` and `--version` flags
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