feat: Add command line flags for Viper configuration options

Fixes #48

Add command line flags for Viper configuration options in `cmd/root.go`.

* Add command line flags for `API_TOKEN`, `API_URL`, `DATA_PATH`, `GPU_TEMP_THRESHOLD`, `ALWAYS_USE_NATIVE_HASHCAT`, `SLEEP_ON_FAILURE`, `FILES_PATH`, `EXTRA_DEBUGGING`, `STATUS_TIMER`, `WRITE_ZAPS_TO_FILE`, `ZAP_PATH`, and `RETAIN_ZAPS_ON_COMPLETION`.
* Bind each flag to its corresponding Viper configuration in the `init` function.
* Add proper descriptions for each command line flag in the viper settings.

---

For more details, open the [Copilot Workspace session](https://copilot-workspace.githubnext.com/unclesp1d3r/CipherSwarmAgent/issues/48?shareId=XXXX-XXXX-XXXX-XXXX).

cmd/root.go

@@ -1,4 +1,3 @@
-// Package cmd
 package cmd
 
 import (
@@ -51,6 +50,54 @@ func init() {
 	err := viper.BindPFlag("debug", rootCmd.PersistentFlags().Lookup("debug"))
 	cobra.CheckErr(err)
 
+	rootCmd.PersistentFlags().String("api_token", "", "API token for the CipherSwarm server")
+	err = viper.BindPFlag("api_token", rootCmd.PersistentFlags().Lookup("api_token"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().String("api_url", "", "URL of the CipherSwarm server")
+	err = viper.BindPFlag("api_url", rootCmd.PersistentFlags().Lookup("api_url"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().String("data_path", "", "Path to the directory where the agent will store data")
+	err = viper.BindPFlag("data_path", rootCmd.PersistentFlags().Lookup("data_path"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Int("gpu_temp_threshold", 80, "Temperature threshold for the GPU in degrees Celsius")
+	err = viper.BindPFlag("gpu_temp_threshold", rootCmd.PersistentFlags().Lookup("gpu_temp_threshold"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Bool("always_use_native_hashcat", false, "Force using the native hashcat binary")
+	err = viper.BindPFlag("always_use_native_hashcat", rootCmd.PersistentFlags().Lookup("always_use_native_hashcat"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Duration("sleep_on_failure", 60*time.Second, "Duration of sleep after a task failure")
+	err = viper.BindPFlag("sleep_on_failure", rootCmd.PersistentFlags().Lookup("sleep_on_failure"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().String("files_path", "", "Path to the directory where the agent will store task files")
+	err = viper.BindPFlag("files_path", rootCmd.PersistentFlags().Lookup("files_path"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Bool("extra_debugging", false, "Enable additional debugging information")
+	err = viper.BindPFlag("extra_debugging", rootCmd.PersistentFlags().Lookup("extra_debugging"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Int("status_timer", 3, "Interval in seconds for sending status updates to the server")
+	err = viper.BindPFlag("status_timer", rootCmd.PersistentFlags().Lookup("status_timer"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Bool("write_zaps_to_file", false, "Write zap output to a file in the zaps directory")
+	err = viper.BindPFlag("write_zaps_to_file", rootCmd.PersistentFlags().Lookup("write_zaps_to_file"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().String("zap_path", "", "Path to the directory where the agent will store zap output files")
+	err = viper.BindPFlag("zap_path", rootCmd.PersistentFlags().Lookup("zap_path"))
+	cobra.CheckErr(err)
+
+	rootCmd.PersistentFlags().Bool("retain_zaps_on_completion", false, "Retain zap files after completing a task")
+	err = viper.BindPFlag("retain_zaps_on_completion", rootCmd.PersistentFlags().Lookup("retain_zaps_on_completion"))
+	cobra.CheckErr(err)
+
 	setDefaultConfigValues()
 }