Macros for FIJI in the FIJI Macro Language
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Updated
Mar 4, 2021 - ImageJ Macro
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Macros for FIJI in the FIJI Macro Language
ImageJ Plugin for Automated Cancer Cell Vessel Co-option Analysis
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
Source code and installation instructions for FIJI/ImageJ plugin that tracks S.pombe spindle ends
FIJI macros for Enrichment Analysis
Python script to facilitate the processing of data obtained with the AnalyzeSkeleton tool from Fiji/ImageJ
Maximum of Laplacian of Gaussian filters (imageJ plugin)
This is an easy to use active contours api for Fiji(ImageJ).
Create random points in binary image and calculate number of points in objects of interest and distance to object of interest
MRI ImageJ related python (jython) module.
Fiji/ImageJ plugin to annotate a labeled image
Fiji macro that splits and merges multi-dimensional TIFFs.
This repository aims to provide practical hands-on training in sequencing informatics, focusing on the analysis of genomic datasets using R, Python, and Fiji/ImageJ. It is designed to equip learners with the necessary skills to become professional programmers, data analysts, and data scientists with a strong emphasis on statistics.
A simple POM to update Bio-Formats on a Fiji distribution
☕ 🔬 🔣 Fiji Action Bars provided by the IMCF.