Skeleton Analyzer 🦴

Python script to facilitate the processing of data obtained with the AnalyzeSkeleton tool from Fiji/ImageJ

Analyze

• Branches, Junctions and End-point Voxels are sums
• Average Branch Length is a mean

How to use

Web way

• Skeleton Analyzer
• Or with LabMaster (bundle of application)

If the application is dormant, you can restart it.

LOCAL easy way (WINDOWS only)

• Download last release skeletonanalyzer.exe
• Install Python 3
• Run skeletonanalyzer.exe

LOCAL other way

• Download GitHub repo
• Install Python 3
• Install packages from requirements.txt with pip install -r requirements.txt in CMD
• Run in CMD streamlit run main.py
• Enjoy 🎉

Documentation of AnalyzeSkeleton from Fiji

Issues

Please contact minnitijulien06@gmail.com or Issues