Repositories list

• carver

  Public
  MATLAB

  •3•1•0•0•Updated Sep 24, 2024Sep 24, 2024

• mouselight_toolbox

  Public
  A Matlab toolbox for doing MouseLight-y things

  MATLAB

  •1•2•0•0•Updated Apr 4, 2024Apr 4, 2024

• soma-detector

  Public
  Code for automatically detecting putative somata

  MATLAB

  •

  MIT License

  •0•0•0•0•Updated Aug 14, 2023Aug 14, 2023

• render

  Public
  Stitching of individual images tiles into coherent volume

  Julia

  •

  Other

  •1•1•0•0•Updated Aug 14, 2023Aug 14, 2023

• freezing

  Public
  Code for compressing raw tiles to .mj2

  MATLAB

  •

  Other

  •0•0•0•0•Updated May 24, 2023May 24, 2023

• hortacloud-protocol

  Public
  Python

  •0•0•0•0•Updated Mar 29, 2023Mar 29, 2023

• workstation

  Public archive
  Archived fork. The most up-to-date code can be found at JaneliaSciComp/workstation.

  Java

  •

  Other

  •11•3•0•0•Updated Dec 8, 2021Dec 8, 2021

• skeletonize

  Public
  Shell

  •2•0•0•0•Updated Nov 13, 2021Nov 13, 2021

• pipeline-stitching

  Public
  Stitching pipeline that creates the YML file to be consumed by the render

  MATLAB

  •2•1•0•0•Updated Aug 22, 2021Aug 22, 2021

• pipeline-featmatch

  Public
  MATLAB

  •2•0•0•0•Updated Aug 19, 2021Aug 19, 2021

• MouseLight_Microscope_Software

  Public
  Microscope Control Software

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •2•2•0•0•Updated May 18, 2021May 18, 2021

• pipeline-descriptor

  Public
  DoG descriptor used in stitching pipeline

  Shell

  •2•0•0•0•Updated Mar 12, 2021Mar 12, 2021

• common

  Public
  MATLAB

  •1•0•0•0•Updated Feb 12, 2021Feb 12, 2021

• buildBrain

  Public
  MATLAB

  •2•0•0•0•Updated Aug 6, 2020Aug 6, 2020

• pipeline-mergeh5

  Public
  Generates a single H5 file from a rendered probability image on which segmentation can be performed

  Shell

  •2•0•0•0•Updated May 18, 2020May 18, 2020

• lineFix

  Public
  Python

  •1•0•0•0•Updated Apr 28, 2020Apr 28, 2020

• lapwing

  Public
  Simple UI for browsing large stacks

  MATLAB

  •0•0•0•0•Updated Apr 2, 2020Apr 2, 2020

• Analysis-Paper

  Public
  Analysis scripts for Winnubst et al. 2019

  MATLAB

  •2•6•0•0•Updated Oct 11, 2019Oct 11, 2019

• MouseLight-Acquisition-Pipeline

  Public
  Docker Compose system for operating Pipeline services.

  Shell

  •

  Other

  •1•0•0•0•Updated Sep 6, 2019Sep 6, 2019

• mouse2syglass

  Public
  Converts mouselight octree format to syglass tif

  MATLAB

  •2•0•0•0•Updated May 24, 2019May 24, 2019

• pipeline-worker-client

  Public
  TypeScript

  •

  Other

  •0•0•0•0•Updated May 3, 2019May 3, 2019

• pipeline-worker-api

  Public
  TypeScript

  •

  Other

  •0•1•0•0•Updated May 3, 2019May 3, 2019

• pipeline-scheduler

  Public
  TypeScript

  •

  Other

  •0•0•0•0•Updated May 3, 2019May 3, 2019

• pipeline-ui

  Public
  TypeScript

  •

  Other

  •0•0•0•0•Updated May 3, 2019May 3, 2019

• pipeline-api

  Public
  TypeScript

  •

  Other

  •0•0•0•0•Updated May 3, 2019May 3, 2019

• pipeline-task-definitions

  Public
  Shell

  •0•0•0•0•Updated May 3, 2019May 3, 2019

• MouseLight_Microscope_Hardware

  Public
  Microscope plans and parts

  Verilog

  •

  Other

  •3•0•0•0•Updated Apr 12, 2019Apr 12, 2019

• mltk-bary

  Public
  Dependency of render: barycentric-transform

  C

  •1•0•2•0•Updated Mar 8, 2019Mar 8, 2019

• pipeline-reconBrain

  Public
  MATLAB

  •2•0•0•0•Updated Dec 21, 2018Dec 21, 2018

• compression

  Public
  routines used for (de)archiving tif files used for mouselight project.

  Shell

  •1•0•0•0•Updated Dec 20, 2018Dec 20, 2018