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@DCAN-Labs Developmental Cognition and Neuroimaging Labs

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    127 repositories

    • cdni-brain

      Public
      readthedocs for CDNI collaborators and members
      readthedocs
      2•3•20•2•Updated Oct 23, 2024Oct 23, 2024

    • abcd-dicom2bids

      Public
      For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•19•3•1•Updated Oct 23, 2024Oct 23, 2024

    • hbcdsequences

      Public
      0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • hbcd-docs

      Public
      0•0•9•0•Updated Oct 23, 2024Oct 23, 2024

    • loes-scoring-2

      Public
      Code for automated Loes scoring.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • monai

      Public
      MONAI code used by CDNI
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • HBCD-MADE

      Public
      HBCD branch of the MADE pipeline for EEG preprocessing
      MATLAB
      •3•2•0•1•Updated Oct 21, 2024Oct 21, 2024

    • abcd-hcp-pipeline

      Public
      bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
      pipelineimage-processingfmrimri-imagesbids-formatfmri-preprocessing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•50•8•1•Updated Oct 19, 2024Oct 19, 2024

    • Seg-Model-Creation-GUI

      Public
      A user interface for nNUnet model training
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • dcan-nn-unet

      Public
      Utility programs created for using nn-UNet on ABCD data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Oct 18, 2024Oct 18, 2024

    • SynthSeg

      Public
      Contrast-agnostic segmentation of MRI scans
      Python
      •94•1•8•0•Updated Oct 18, 2024Oct 18, 2024

    • dcan_bold_processing

      Public
      functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •7•7•4•1•Updated Oct 18, 2024Oct 18, 2024

    • automated-subset-analysis

      Public
      Automated split-half subset reliability analysis scripts written for the ABCD resource paper.
      Python
      •1•1•0•0•Updated Oct 3, 2024Oct 3, 2024

    • infant-abcd-bids-pipeline

      Public
      Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
      dockerfilebidsapp
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•8•0•0•Updated Sep 27, 2024Sep 27, 2024

    • external-software

      Public
      Tools needed for the DCAN Labs pipelines that we didn't write.
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Sep 27, 2024Sep 27, 2024

    • abcc_automated_QC

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • BrainSwipes

      Public
      A crowdsource quality assurance application for use with neuroimaging datasets.
      neuroimagingcrowdsourcingquality-assurance
      Vue
      •
      Apache License 2.0
      •1•0•8•0•Updated Sep 26, 2024Sep 26, 2024

    • internal-tools

      Public
      Tools written by DCAN Labs and used, in common, by the DCAN pipelines.
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 25, 2024Sep 25, 2024

    • brain_coverage

      Public
      Scripts used for calculating cut off in functional MR images
      Python
      •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • nhp-abcd-bids-pipeline

      Public
      Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•3•5•0•Updated Sep 20, 2024Sep 20, 2024

    • BIBSnet

      Public
      This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.
      Python
      •
      Apache License 2.0
      •8•4•14•3•Updated Sep 19, 2024Sep 19, 2024

    • loes-scoring-data

      Public
      Data for Loes scoring project
      Python
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • loes-score-data

      Public
      Stores only de-identified Loes score data
      0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • loes-scoring-explainability

      Public
      Loes scoring interpretability
      Python
      •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • hbcd-standards-RTDs

      Public
      0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • hbcd_mrs_to_nii_conversion

      Public
      Shell
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • hcp-ya

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •909•0•0•0•Updated Sep 3, 2024Sep 3, 2024

    • BOBsRepositoryRTD

      Public
      0•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • bobsrepository

      Public
      some default
      0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • nda-bids-upload

      Public
      For uploading BIDS data to the NDA.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Aug 20, 2024Aug 20, 2024