Repositories list

• rarelink

  Public
  RareLink - A Rare Disease Interoperability Framework in REDCap to enable Registry Use, HL7 FHIR, and the GA4GH Phenopacket Schema

  interoperabilityfhirredcap+ 2rarediseasephenopackets-v2

  Jupyter Notebook

  •

  MIT License

  •1•0•14•0•Updated Oct 23, 2024Oct 23, 2024

• CRISP

  Public
  HTML

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• phenopacket_mapper

  Public
  A Python library to map from any bespoke tabular data format to the GA4GH Phenopacket schema.

  parsingmappingcreation+ 1phenopackets

  Python

  •

  MIT License

  •0•0•24•0•Updated Oct 18, 2024Oct 18, 2024

• rd-cdm

  Public
  Repo for the ontology-based Rare Disease Common Data Model harmonising international registry use, FHIR, and Phenopackets

  Python

  •

  MIT License

  •0•0•1•0•Updated Oct 13, 2024Oct 13, 2024

• ERKER

  Public
  ERKER - ERDRI-CDS kompatible Erfassung in REDCap

  Jupyter Notebook

  •0•2•12•0•Updated Sep 18, 2024Sep 18, 2024

• genophenocorr

  Public
  Genotype Phenotype Correlation

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• pyphetools

  Public
  Python Phenopacket Tools

  Python

  •

  MIT License

  •1•0•0•0•Updated Jun 5, 2024Jun 5, 2024

• nfdi4health-metadataschema

  Public
  GLSL

  •0•2•0•0•Updated Jun 4, 2024Jun 4, 2024

• interagent

  Public
  FHIR IG for Interagent

  GLSL

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated May 7, 2024May 7, 2024

• ERKER2Phenopackets

  Public
  A pipeline of ERKER data into the phenopackets data structure.

  pipelinerare-diseasesphenopackets-v2

  Python

  •

  MIT License

  •1•4•9•0•Updated Dec 29, 2023Dec 29, 2023

• .github

  Public
  0•0•0•0•Updated Sep 7, 2023Sep 7, 2023

• napkon-string-matching

  Public
  Python

  •0•2•0•0•Updated May 26, 2023May 26, 2023

• elimu-vcf2fhir

  Public
  vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration

  Python

  •

  Apache License 2.0

  •24•0•0•0•Updated Apr 3, 2023Apr 3, 2023

• BiasAI

  Public
  Analysis on Survey Bias in AI

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 26, 2023Mar 26, 2023

• erregerfall

  Public
  GLSL

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Mar 10, 2023Mar 10, 2023

• sphn-to-fhir-map

  Public
  Map of the Swiss Personalized Health Network Dataset to Fast Healthcare Interoperability Resources - Submission to MIE 2023 by S. Klopfenstein, S. Thun, K. Crameri and C. Stellmach

  mapmappingdata-structures+ 5interoperabilityfhirhealthdatahealth-researchsphn

  0•1•0•0•Updated Mar 2, 2023Mar 2, 2023

• docker-helpers

  Public
  Dockerfile

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• docker-pandas

  Public
  Dockerfile

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• SNOMEDCT_OPAL

  Public
  Python

  •0•0•0•3•Updated Feb 6, 2023Feb 6, 2023

• HiGHmed_UCC

  Public
  Defines the profiles based on HiGHmed UCC model on CKM

  GLSL

  •1•0•0•0•Updated Jan 22, 2023Jan 22, 2023

• napkon-geccoplus

  Public
  NAPKON GECCOplus module

  GLSL

  •

  Other

  •0•6•0•0•Updated Dec 9, 2022Dec 9, 2022

• medikationsplan

  Public
  GLSL

  •0•1•0•0•Updated Nov 28, 2022Nov 28, 2022

• erker-on-fhir

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Sep 12, 2022Sep 12, 2022

• fasade-on-fhir

  Public
  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Sep 12, 2022Sep 12, 2022

• ards-ecmo

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Sep 8, 2022Sep 8, 2022

• mesh-terms-de

  Public
  Python

  •0•0•0•0•Updated Aug 25, 2022Aug 25, 2022

• MedikationsPlanOnFHIR

  Public
  Swift

  •2•0•0•0•Updated May 24, 2022May 24, 2022

• FHIR-Research-Review

  Public
  HTML

  •1•0•0•0•Updated May 17, 2022May 17, 2022

• vcf2fhir

  Public
  Python

  •0•0•0•0•Updated May 11, 2022May 11, 2022

• napkon-cardiology

  Public
  NAPKON cardiology module

  GLSL

  •

  Other

  •0•3•1•0•Updated Apr 8, 2022Apr 8, 2022