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    260 repositories

    • aind-ophys-motion-correction

      Public
      Python
      •
      MIT License
      •0•1•10•1•Updated Oct 14, 2024Oct 14, 2024

    • aind-qc-portal

      Public
      Quality control portal
      Python
      •
      MIT License
      •0•0•5•0•Updated Oct 14, 2024Oct 14, 2024

    • aind-codeocean-pipeline-monitor

      Public
      Package to manage monitoring a Code Ocean pipeline
      Python
      •
      MIT License
      •0•0•1•1•Updated Oct 14, 2024Oct 14, 2024

    • aind-data-schema

      Public
      A library that defines AIND data schema and validates JSON.
      aind-core-services
      Python
      •
      MIT License
      •16•23•35•4•Updated Oct 14, 2024Oct 14, 2024

    • aind-metadata-viz

      Public
      Website for public metadata visualization
      Python
      •
      MIT License
      •0•0•3•0•Updated Oct 14, 2024Oct 14, 2024

    • Aind.Behavior.Services

      Public
      C#
      •
      MIT License
      •0•0•10•1•Updated Oct 14, 2024Oct 14, 2024

    • coherent_lasers

      Public
      Python drivers for coherent lasers
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • aind-metadata-upgrader

      Public
      Upgrade JSON metadata from old versions of aind-data-schema
      Python
      •
      MIT License
      •0•1•4•2•Updated Oct 14, 2024Oct 14, 2024

    • aind-metadata-mapper

      Public
      Repository to help gather and map metadata from different sources
      aind-core-services
      Python
      •
      MIT License
      •2•0•15•3•Updated Oct 14, 2024Oct 14, 2024

    • parallax

      Public
      GUI control software for the Modular Insertion System (MIS)
      processingacquisitionunder-development
      Python
      •
      MIT License
      •1•5•0•2•Updated Oct 14, 2024Oct 14, 2024

    • FORCEB-kv-refstacks-Cellpose

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • aind-session

      Public
      User-friendly tools for accessing paths, metadata and assets related to AIND sessions
      Python
      •
      MIT License
      •0•0•2•0•Updated Oct 14, 2024Oct 14, 2024

    • aind-smartspim-data-transformation

      Public
      Data transformations applied to the SmartSPIM data before uploading to the cloud storage service.
      Python
      •
      MIT License
      •0•0•1•1•Updated Oct 14, 2024Oct 14, 2024

    • dynamic-foraging-task

      Public
      Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
      Python
      •
      MIT License
      •4•5•92•2•Updated Oct 14, 2024Oct 14, 2024

    • voxel

      Public
      General purpose microscope control repository
      Python
      •
      MIT License
      •2•4•14•2•Updated Oct 14, 2024Oct 14, 2024

    • aind-units-nwb

      Public
      Code Ocean capsule to export ephys units data to NWB
      Python
      •
      MIT License
      •0•0•2•0•Updated Oct 14, 2024Oct 14, 2024

    • aind-data-schema-models

      Public
      Data models used in aind-data-schema
      Python
      •
      MIT License
      •2•0•9•3•Updated Oct 13, 2024Oct 13, 2024

    • Aind.Behavior.VrForaging

      Public
      Task implemention of VR Foraging experiment
      C#
      •
      MIT License
      •0•2•21•2•Updated Oct 12, 2024Oct 12, 2024

    • Bonsai.AllenNeuralDynamics

      Public
      A Bonsai package for version control and manipulation of Git repositories
      C#
      •
      Other
      •0•0•5•0•Updated Oct 12, 2024Oct 12, 2024

    • aind-ephys-visualization

      Public
      CodeOcean capsule for ephys visualization
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2024Oct 12, 2024

    • aind-ephys-preprocessing

      Public
      CodeOcean capsule for ephys preprocessing
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2024Oct 12, 2024

    • aind-ephys-job-dispatch

      Public
      Capsule to dispatch ephys jobs in CO pipeline
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 12, 2024Oct 12, 2024

    • aind-metadata-entry-js

      Public
      Metadata entry using javascript
      aind-core-servicesaind-deploy-services
      JavaScript
      •
      MIT License
      •2•1•10•0•Updated Oct 12, 2024Oct 12, 2024

    • aind-slims-api

      Public
      AIND-specific access to data stored in SLIMS
      Python
      •
      MIT License
      •1•0•4•3•Updated Oct 11, 2024Oct 11, 2024

    • lightning_pose_CO_capsule

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • harp.core.rp2040

      Public
      A Harp core implementation on the RP2040
      harp
      C++
      •
      MIT License
      •0•3•18•0•Updated Oct 11, 2024Oct 11, 2024

    • aind-watchdog-service

      Public
      Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.
      Python
      •
      MIT License
      •0•2•22•3•Updated Oct 11, 2024Oct 11, 2024

    • Aind.Behavior.ExperimentLauncher

      Public
      Source for for a minimal framework that can be used to build experimental interfaces
      Python
      •
      MIT License
      •0•1•4•0•Updated Oct 11, 2024Oct 11, 2024

    • aind-dynamic-foraging-basic-analysis

      Public
      compute behavioral metrics and generate basic plottings for the dynamic foraging task
      Python
      •
      MIT License
      •0•0•8•1•Updated Oct 11, 2024Oct 11, 2024

    • lightsheet-denoising-tests

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024