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chore: updating README.md
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leoisl committed Dec 15, 2023
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Expand Up @@ -88,31 +88,36 @@ chmod +x pandora-linux-precompiled-v0.12.0-alpha.0
* **Notes**:
* We provide precompiled binaries for Linux OS only;

### Other installation methods

We have several other installation methods but please not that **the methods below are just available for releases,
and not for pre-releases.**
There are several improvements and changes in recent pre-releases versions that we could still not
unit test properly, and therefore are still marked as pre-releases.

### Conda

To install `pandora` through `conda`, run:
To install `pandora` through `conda`, run (warning this will install version `0.9.2`):
```
conda install -c bioconda pandora
```

### Containers

[![Docker Repository on Quay](https://quay.io/repository/rmcolq/pandora/status "Docker Repository on Quay")](https://quay.io/repository/rmcolq/pandora)

You can also download a containerized image of Pandora.
Pandora is hosted on Quay and images can be downloaded with the
command:
Pandora is hosted on Quay through Biocontainers and images
can be downloaded and run with the command (warning this will install version `0.9.2`):

```
URI="quay.io/rmcolq/pandora"
docker pull "$URI"
URI="quay.io/biocontainers/pandora"
docker run -it "$URI" pandora --help
```

Alternatively, using singularity:
Alternatively, you can also download and run singularity images through the galaxy project depot
(warning this will install version `0.9.2`):

```
URI="docker://quay.io/rmcolq/pandora"
URI="https://depot.galaxyproject.org/singularity/pandora%3A0.9.2--h4ac6f70_0"
singularity exec "$URI" pandora --help
```

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