add test workflow

.github/workflows/test.yml

@@ -0,0 +1,41 @@
+name: test
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  test-w-conda-recipe:
+    strategy:
+      matrix:
+        os: [macos-latest, windows-latest, ubuntu-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+          submodules: true
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          auto-activate-base: true
+          activate-environment: ""
+          channel-priority: strict
+          miniforge-variant: Mambaforge
+          use-mamba: true
+      - name: install common dependencies
+        run: mamba install -n base -c conda-forge conda-build boa -y
+      - name: linux conda build
+        if: matrix.os == 'ubuntu-latest'
+        shell: bash -l {0}
+        run: conda mambabuild -c conda-forge conda-recipe
+      - name: osx conda build
+        if: matrix.os == 'macos-latest'
+        shell: bash -l {0}
+        run:  conda mambabuild -c conda-forge conda-recipe
+      - name: windows conda build
+        if: matrix.os == 'windows-latest'
+        shell: cmd /C CALL {0}
+        run: conda mambabuild -c conda-forge conda-recipe

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "ext/pybind11"]
-	path = ext/pybind11
-	url = https://github.com/pybind/pybind11

CMakeLists.txt

@@ -35,6 +35,9 @@ include_directories(include)
 FIND_PACKAGE(VIGRA REQUIRED)
 include_directories(${VIGRA_INCLUDE_DIR})
 
+find_package(pybind11 REQUIRED)
+include_directories(${pybind11_INCLUDE_DIRS})
+
 FIND_PACKAGE(Threads REQUIRED)  # includes pthread
 
 #--------------------------------------------------------
@@ -54,5 +57,4 @@ endif(WITH_OPENMP)
 #--------------------------------------------------------
 # source directory
 #--------------------------------------------------------
-add_subdirectory(ext/pybind11)
 add_subdirectory(src)

conda-recipe/conda_build_config.yaml

@@ -1,9 +1,18 @@
+c_compiler:
+  - vs2019                     # [win]
+
+cxx_compiler:
+  - vs2019                     # [win]
+
+pybind11_abi:
+  - 4
+
 boost:
   - 1.74
 vigra:
   - 1.11.1
 python:
-  - 3.7
+  - 3.7  # [not (osx and arm64)]
   - 3.8
   - 3.9
   - 3.10

conda-recipe/meta.yaml

@@ -23,6 +23,7 @@ requirements:
   host:
     - boost {{ boost }}
     - python
+    - pybind11
     - vigra {{ vigra }}
 
   run:

src/python/ilastiktools/CMakeLists.txt

@@ -1,4 +1,4 @@
-find_package( PythonInterp REQUIRED )
+# find_package( PythonInterp REQUIRED )
 pybind11_add_module(_core core.cxx)
 
 execute_process(COMMAND ${PYTHON_EXECUTABLE} -c