refactor packaging to handle submodules in colab (#91)

ilabcode · Sep 7, 2023 · 2d7901d · 2d7901d
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Showing 16 changed files with 5 additions and 4 deletions.
diff --git a/docs/source/tutorials.md b/docs/source/tutorials.md
@@ -14,8 +14,8 @@ glob:
 
 | Notebook | Colab |
 | --- | ---|
-| {ref}`probabilistic_networks` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/ilabcode/pyhgf/blob/master/docs/source/notebooks/0.1-Creating_networks.ipynb)
-| {ref}`theory` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/ilabcode/pyhgf/blob/master/docs/source/notebooks/0.0-Theory.ipynb)
+| {ref}`probabilistic_networks` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/ilabcode/pyhgf/blob/master/docs/source/notebooks/0-Creating_networks.ipynb)
+| {ref}`theory` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/ilabcode/pyhgf/blob/master/docs/source/notebooks/0-Theory.ipynb)
 
 ## Using the Hierarchical Gaussian Filter
 

diff --git a/setup.py b/setup.py
@@ -52,9 +52,10 @@ def get_version(rel_path):
         long_description=open("README.md", encoding='utf-8').read(),
         long_description_content_type="text/markdown",
         license="GPL-3.0",
-        version=get_version("pyhgf/__init__.py"),
+        version=get_version("src/pyhgf/__init__.py"),
         install_requires=get_requirements(),
         include_package_data=True,
-        package_data={"": ["pyhgf/pyhgf/data/*.dat"]},
+        package_dir = {"": "src"},
+        package_data={"": ["pyhgf/src/pyhgf/data/*.dat"]},
         packages=find_packages(),
     )
diff --git a/pyhgf/__init__.py → src/pyhgf/__init__.py b/pyhgf/__init__.py → src/pyhgf/__init__.py
diff --git a/pyhgf/data/binary_input.txt → src/pyhgf/data/binary_input.txt b/pyhgf/data/binary_input.txt → src/pyhgf/data/binary_input.txt
diff --git a/pyhgf/data/binary_response.txt → src/pyhgf/data/binary_response.txt b/pyhgf/data/binary_response.txt → src/pyhgf/data/binary_response.txt
diff --git a/pyhgf/data/usdchf.txt → src/pyhgf/data/usdchf.txt b/pyhgf/data/usdchf.txt → src/pyhgf/data/usdchf.txt
diff --git a/pyhgf/distribution.py → src/pyhgf/distribution.py b/pyhgf/distribution.py → src/pyhgf/distribution.py
diff --git a/pyhgf/model.py → src/pyhgf/model.py b/pyhgf/model.py → src/pyhgf/model.py
diff --git a/pyhgf/networks.py → src/pyhgf/networks.py b/pyhgf/networks.py → src/pyhgf/networks.py
diff --git a/pyhgf/plots.py → src/pyhgf/plots.py b/pyhgf/plots.py → src/pyhgf/plots.py
diff --git a/pyhgf/response.py → src/pyhgf/response.py b/pyhgf/response.py → src/pyhgf/response.py
diff --git a/pyhgf/typing.py → src/pyhgf/typing.py b/pyhgf/typing.py → src/pyhgf/typing.py
diff --git a/src/pyhgf/updates/__init__.py b/src/pyhgf/updates/__init__.py
diff --git a/pyhgf/updates/binary.py → src/pyhgf/updates/binary.py b/pyhgf/updates/binary.py → src/pyhgf/updates/binary.py
diff --git a/pyhgf/updates/categorical.py → src/pyhgf/updates/categorical.py b/pyhgf/updates/categorical.py → src/pyhgf/updates/categorical.py
diff --git a/pyhgf/updates/continuous.py → src/pyhgf/updates/continuous.py b/pyhgf/updates/continuous.py → src/pyhgf/updates/continuous.py