final edits mar 11 email

grady · Mar 14, 2024 · 4fc9e0f · 4fc9e0f
1 parent cb818d2
commit 4fc9e0f
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Showing 4 changed files with 9 additions and 6 deletions.
diff --git a/.github/workflows/build-submission-files.yml b/.github/workflows/build-submission-files.yml
@@ -38,6 +38,7 @@ jobs:
             sn-basic.bst
             sn-jnl.cls
             figure/*.pdf
+            figure/*.png
       - name: Create pages directory
         run: |
           mkdir _site

diff --git a/dentlinger.Rnw b/dentlinger.Rnw
@@ -78,14 +78,14 @@
 
 <<setup, include=FALSE>>=
 mm2in <- 0.0393701
-twocol <- 84 * mm2in
-bigcol <- 174 * mm2in
+twocol <- 80 * mm2in
+bigcol <- 170 * mm2in
 smallcol <- 119 * mm2in
 
 make_plot_namer <- function(prefix="Figure-", n=1L, width=2){
   function(x){
     x2 <- file.path(dirname(x), paste0(prefix, formatC(n, width=width, flag="0"),".", tools::file_ext(x)))
-    magick::image_write(magick::image_read_pdf(x), path=fs::path_ext_set(x2, "png"))
+    magick::image_write(magick::image_read_pdf(x), path=fs::path_ext_set(x2, "png"), density=300)
     n <<- n + 1L
     if (file.rename(x, x2)) x2 else x
   }
@@ -499,7 +499,7 @@ $p=\Sexpr{signif(gender_side_test$p.value, 2)}$).
 <<length_cause, fig.height=3>>=
 ggplot(BigIslandStrandings, aes(x=Cause, y=SCL)) + geom_boxplot() + labs(y="Carapace length (cm) ") +  theme_bw()
 @
-\caption{Straight carapace length (SCL) was measured in 488 records, and and plotted for each stranding cause. Fibropapillomatosis is abbreviated FP. Boxplot outliers begin at 1.5 times the inter-quartile distance.}\label{fig:length_cause}
+\caption{Straight carapace length (SCL) was measured in 488 records, and plotted for each stranding cause. Fibropapillomatosis is abbreviated FP. Boxplot outliers begin at 1.5 times the inter-quartile distance.}\label{fig:length_cause}
 \end{figure}
 
 

diff --git a/sn-basic.bst b/sn-basic.bst
@@ -797,7 +797,9 @@ FUNCTION {n.dashify}
 }
 
 FUNCTION {word.in}
-{ bbl.in capitalize
+{ 
+  bbl.in capitalize
+  "\emph{" swap$ * "}" *
   ":" *
   " " * }
 

diff --git a/turtles.bib b/turtles.bib
@@ -72,7 +72,7 @@ @article{balazs2004thirty
 @article{balazs2015review,
   author={Balazs, GH and van Houtan, KS and Hargrove, SA and Brunson, SM and Murakawa, SK},
   year={2015},
-  title={A review of the demographic features of Hawaiian green turtles (\emph{{C}helonia mydas})},
+  title={A review of the demographic features of {H}awaiian green turtles (\emph{{C}helonia mydas})},
   journal={Chelonian Conserv Biol},
   volume={14},
   pages={119-129},