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Updating readme #5

Closed
wants to merge 18 commits into from
Closed

Updating readme #5

wants to merge 18 commits into from

Commits on Apr 26, 2024

  1. added wdl for prepare_bed

    @Sanaz01
    Sanaz01 committed Apr 26, 2024
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  2. added read_counts task

    @Sanaz01
    Sanaz01 committed Apr 26, 2024
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Commits on May 5, 2024

  1. keep custom workflow scripts together

    @Sanaz01
    Sanaz01 committed May 5, 2024
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  2. keep input meta data together

    @Sanaz01
    Sanaz01 committed May 5, 2024
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  3. create lightweight Dockerfiles for WDL workflow

    @Sanaz01
    Sanaz01 committed May 5, 2024
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Commits on May 7, 2024

  1. Updating progress

    @Sanaz01
    Sanaz01 committed May 7, 2024
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Commits on May 9, 2024

  1. remove demo run files

    @Sanaz01
    Sanaz01 committed May 9, 2024
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  2. run using pre-built dockerimage

    @Sanaz01
    Sanaz01 committed May 9, 2024
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  3. update

    @Sanaz01
    Sanaz01 committed May 9, 2024
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Commits on Jun 10, 2024

  1. convert CRAM to VC ready BAM files

    @Sanaz01
    Sanaz01 committed Jun 10, 2024
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Commits on Aug 12, 2024

  1. updated chromoseq WDL

    @Sanaz01
    Sanaz01 committed Aug 12, 2024
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  2. inputs json file

    @Sanaz01
    Sanaz01 committed Aug 12, 2024
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Commits on Sep 25, 2024

  1. working Chromoseq with annovar

    @Sanaz01
    Sanaz01 committed Sep 25, 2024
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Commits on Oct 6, 2024

  1. clean up

    @Sanaz01
    Sanaz01 committed Oct 6, 2024
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  2. remove individual Dockers, using main Docker

    @Sanaz01
    Sanaz01 committed Oct 6, 2024
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  3. adding clean WDL scripts

    @Sanaz01
    Sanaz01 committed Oct 6, 2024
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  4. secondary analysis scripts and files

    @Sanaz01
    Sanaz01 committed Oct 6, 2024
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  5. testing mermaid flowchart

    @Sanaz01
    Sanaz01 committed Oct 6, 2024
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