Releases: epigen/mixscape_seurat
Releases · epigen/mixscape_seurat
v2.0.0 - Snakemake 8 compatible
Breaking change: Requires Snakemake >= v8.20.1
Full Changelog: v1.0.1...v2.0.0
v1.0.1 - package and performance update
Updated package versions, switched to data.table::fread/fwrite, and restructured results for screens with more knockouts.
Full Changelog: v1.0.0...v1.0.1
v1.0.0 - stable version with complete docs
The workflow performs all steps of the Mixscape Vignette on all samples in the annotation file according to the parametrization in the config file.
- Calculation of local perturbation signatures
- Mixscape classification of perturbed cells versus cells with no detectable perturbation
- Visualization of Mixscape results
- Analysis of perturbation responses with Linear Discriminant Analysis (LDA)
Full Changelog: https://github.com/epigen/mixscape_seurat/commits/v1.0.0