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ecotaxa/ecotaxar

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ecotaxar

An R package to access data from EcoTaxa.

Installation

The package is not (yet?) on CRAN, so to install:

remotes::install_github("ecotaxa/ecotaxar")

Usage

Functions starting with api_ call EcoTaxa's API. This is still a work in progress and not all API endpoints are accessible.

Functions starting with db_ require direct access to the database, which is currently only possible from the internal network of the Laboratoire d'Océanographie de Villefranche (LOV).

A few other convenience functions are provided, to read .tsv files output by EcoTaxa and to handle a hierarchical taxonomy.

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An R package to access data from EcoTaxa.

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