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  1. Borealis-BioModeling/aurora-pkpd Borealis-BioModeling/aurora-pkpd Public

    Open Python Web App for Pharmcological Modeling and Analysis

    Python

  2. pysb-pkpd pysb-pkpd Public

    PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.

    Jupyter Notebook 3 4

  3. GAlibrate GAlibrate Public

    Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

    Jupyter Notebook 10 3

  4. NTBEL/diffusion-fit NTBEL/diffusion-fit Public

    Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.

    Python

  5. LoLab-MSM/Gleipnir LoLab-MSM/Gleipnir Public

    Python toolkit for Bayesian parameter inference, model calibration, and model selection using Nested Sampling

    Python 3 2

  6. LoLab-MSM/PyBILT LoLab-MSM/PyBILT Public

    Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

    Python 24 10