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Release 2.0.0

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@rhpvorderman rhpvorderman released this 03 Dec 15:25
· 499 commits to develop since this release
  • The bam-to-gvcf and jointgenotyping subworkflows were combined in a single
    gatk-variantcalling pipeline. This allowed for eliminating some
    inefficiencies that were caused by communication between these pipelines.
  • Simplify the pipelines so they use less subworkflows. This reduces
    the complexity for cromwell and reduces inefficiencies that are caused
    by waiting for the subworkflows to finish.
    It also makes configuring memory or cpu requirements for tasks in the
    workflow a lot easier, as these are not as deeply nested anymore.
  • separated somatic and germline variant calling into their own workflows