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Release 2.0.0
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@rhpvorderman rhpvorderman released this 03 Dec 15:28
· 286 commits to develop since this release
v2.0.0
1791565

  • Replace the bam-to-gvcf and jointgenotyping pipelines with a
    gatk-variantcalling pipeline. This reduces complexity, allows for
    more efficient running of the pipeline and uses less filesystem
    storage.

  • Update biowdl-input-converter tot the latest bugfix release (0.2.1)

  • Update STAR version to 2.7.3a

  • Simplify the pipeline so it uses much less subworkflows. This reduces
    the complexity for cromwell and reduces inefficiencies that are caused
    by waiting for the subworkflows to finish.

    It also makes configuring memory or cpu requirements for tasks in the
    workflow a lot easier, as these are not as deeply nested anymore.

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