Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Generate MAxO-MeSH predictions #137

Merged
merged 3 commits into from
Jul 24, 2023
Merged

Generate MAxO-MeSH predictions #137

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
4cbcbe4
Lexically match MAxO and MeSH
cthoyt Jul 24, 2023
5aaa853
Add a few curations
cthoyt Jul 24, 2023
dee6fe5
Curate more easy mappings
cthoyt Jul 24, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
21 changes: 21 additions & 0 deletions scripts/generate_maxo_mesh_mappings.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
# -*- coding: utf-8 -*-

"""Generate mappings to Gilda from given PyOBO prefixes."""

import click
from more_click import verbose_option

from biomappings.gilda_utils import append_gilda_predictions
from biomappings.utils import get_script_url


@click.command()
@verbose_option
def main():
"""Generate MAxO mappings."""
provenance = get_script_url(__file__)
append_gilda_predictions("maxo", ["mesh"], provenance=provenance)


if __name__ == "__main__":
main()
Loading
Loading