R codes developed for my PhD thesis at Sorbonnes Universités, UMR 7093-LOV
Here, I deposit the main scripts developed during my PhD (2013-2016) and used to collect, curate, prepare, model and analyze data under the R coding environment. I selected the R scripts that are key to reproduce the results published in my PhD thesis (available here: http://www.theses.fr/2016PA066742) and the peer-reviwed scientific articles published from it:
- Benedetti, F., Gasparini, S., & Ayata, S.-D. (2016). Identifying copepod functional groups from species functional traits. Journal of Plankton Research, 38(1), 159-166. doi:10.1093/plankt/fbv096
- Benedetti, F., Guilhaumon, F., Adloff, F., & Ayata, S.-D. (2017). Investigating uncertainties in zooplankton composition shifts under climate change scenarios in the Mediterranean Sea. Ecography, 41(2), 345-360. doi:10.1111/ecog.02434
- Benedetti, F., Vogt, M., Righetti, D., Guilhaumon, F., & Ayata, S.-D. (2018a). Do functional groups of planktonic copepods differ in their ecological niches? Journal of Biogeography, 45(3), 604-616. doi:10.1111/jbi.13166
- Benedetti, F., Ayata, S.-D., Irisson, J.-O., Adloff, F., & Guilhaumon, F. (2018b). Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea. Diversity and distributions, 25(4), 568-581. doi:10.1111/ddi.12857
I acknowledge these R scripts are not commented in the most detailed fashion. I did not know how to use Git and GitHub backed then. Feel free to contact me at: fabio.benedetti@usys.ethz.ch or fabio.benedetti@unibe.ch if you need further information.