Merge branch 'development'

Sync up hot fixes.
bd2kccd · Dec 13, 2022 · f4105de · f4105de
2 parents 5f1fce0 + 66a70ee
commit f4105de
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/main/java/edu/pitt/dbmi/causal/cmd/CausalCmdApplication.java b/src/main/java/edu/pitt/dbmi/causal/cmd/CausalCmdApplication.java
@@ -130,7 +130,7 @@ public static void main(String[] args) {
     private static void runTetrad(CmdArgs cmdArgs) throws AlgorithmRunException, ValidationException, IOException {
         String outDir = cmdArgs.getOutDirectory().toString();
         String prefix = cmdArgs.getFilePrefix();
-        Path outTxtFile = Paths.get(outDir, String.format("%s.txt", prefix));
+        Path outTxtFile = Paths.get(outDir, String.format("%s_out.txt", prefix));
 
         // remove previous files
         if (Files.exists(outTxtFile)) {

diff --git a/src/main/java/edu/pitt/dbmi/causal/cmd/CmdOptions.java b/src/main/java/edu/pitt/dbmi/causal/cmd/CmdOptions.java
@@ -190,7 +190,7 @@ private void addOptionalOptions() {
         options.put(CmdParams.HELP_SCORE_DESC, new Option(null, CmdParams.HELP_SCORE_DESC, false, "Show all the scores along with their descriptions."));
         options.put(CmdParams.HELP_TEST_DESC, new Option(null, CmdParams.HELP_TEST_DESC, false, "Show all the independence tests along with their descriptions."));
         options.put(CmdParams.VERSION, new Option(null, CmdParams.VERSION, false, "Show version."));
-        options.put(CmdParams.FILE_PREFIX, Option.builder().longOpt(CmdParams.FILE_PREFIX).desc("Output file name prefix.").hasArg().argName("string").build());
+        options.put(CmdParams.FILE_PREFIX, Option.builder().longOpt(CmdParams.FILE_PREFIX).desc("Replace the default output filename prefix in the format of <algorithm>_<numeric timestamp>.").hasArg().argName("string").build());
         options.put(CmdParams.JSON_GRAPH, new Option(null, CmdParams.JSON_GRAPH, false, "Write out graph as json."));
         options.put(CmdParams.DIR_OUT, Option.builder().longOpt(CmdParams.DIR_OUT).desc("Output directory").hasArg().argName("directory").build());