Merged changes for release.

README.md

@@ -10,4 +10,4 @@ https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/ca
 
 Here is the current jar to use for causal-cmd:
 
-https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/causal-cmd/1.8.0/causal-cmd-1.8.0-jar-with-dependencies.jar
+https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/causal-cmd/1.10.0/causal-cmd-1.10.0-jar-with-dependencies.jar

pom.xml

@@ -4,7 +4,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>edu.pitt.dbmi</groupId>
     <artifactId>causal-cmd</artifactId>
-    <version>1.9.0</version>
+    <version>1.10.0</version>
     <packaging>jar</packaging>
 
     <properties>
@@ -22,7 +22,7 @@
         <dependency>
             <groupId>io.github.cmu-phil</groupId>
             <artifactId>tetrad-lib</artifactId>
-            <version>7.4.0</version>
+            <version>7.5.0</version>
             <exclusions>
                 <exclusion>
                     <groupId>org.slf4j</groupId>

src/main/java/edu/pitt/dbmi/causal/cmd/data/DataFiles.java

@@ -24,7 +24,7 @@
 import edu.cmu.tetrad.data.Knowledge;
 import edu.cmu.tetrad.data.SimpleDataLoader;
 import edu.cmu.tetrad.graph.Graph;
-import edu.cmu.tetrad.graph.GraphPersistence;
+import edu.cmu.tetrad.graph.GraphSaveLoadUtils;
 import edu.cmu.tetrad.util.DataConvertUtils;
 import edu.pitt.dbmi.causal.cmd.AlgorithmRunException;
 import edu.pitt.dbmi.causal.cmd.CmdArgs;
@@ -120,7 +120,7 @@ public static Graph readInExternalGraph(CmdArgs cmdArgs, PrintStream out) throws
             return null;
         } else {
             LogMessages.readingFileStart(file, LOGGER, out);
-            Graph graph = GraphPersistence.loadGraphTxt(file.toFile());
+            Graph graph = GraphSaveLoadUtils.loadGraphTxt(file.toFile());
             LogMessages.readingFileEnd(file, LOGGER, out);
 
             return graph;