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An algorithm used in bioinformatics to align protein or nucleotide sequences. It was one of the first applications of dynamic programming to compare biological sequences.

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anicksaha/needleman_wunsch

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needleman_wunsch

HOX:
  • python3 main.py -q _data/Human_HOX.fa -r _data/Fly_HOX.fa
  • python3 main.py -q _data/Human_HOX.fa -r _data/Fly_HOX.fa -m _data/Match_HOX.txt
PAX:
  • python3 main.py -q _data/Human_PAX.fa -r _data/Fly_PAX.fa
  • python3 main.py -q _data/Human_PAX.fa -r _data/Fly_PAX.fa -m _data/Match_PAX.txt
TITIN:
  • python3 main.py -q _data/TITIN_Human.fa -r _data/TITIN_Mouse.fa
  • python3 main.py -q _data/TITIN_Human.fa -r _data/TITIN_Mouse.fa -m _data/TITIN_Match.txt

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An algorithm used in bioinformatics to align protein or nucleotide sequences. It was one of the first applications of dynamic programming to compare biological sequences.

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