In summary, this repository contains xml files with basic data type definitions, searches, attributes, queries, and tables for OrthoMCL.org. The two data types are Sequences and Groups.
** Dependencies
- yarn / npm / ant
- WEBAPP_PROP_FILE file (file with one property for the webapp target directory) webappTargetDir=BLAH
- environment variables for GUS_HOME and PROJECT_HOME
- Internal Dependencies
- WDK, CBIL, ReFlow, EbrcModelCommon
** Installation instructions.
- bld OrthoMCLModel
- changes to wdk model xml files requires reload of tomcat instance
** Operating instructions.
- Installation is successful if you can run "wdkXml -model $MODEL_NAME" without error
** manifest
- OrthoMCLModel/MapProteomeService contains mcl but the workflow uses /eupath/workflow-software/bin/mcl
- OrthoMCLModel/Ppe/lib/perl contains MatrixColumnManager.pm
- OrthoMCLModel/Model/lib/wdk :: xml files which define wdk records, searches, params.
- OrthoMCLModel/Model/lib/xml :: tuning manager configuration
- OrthoMCLModel/Model/src/main/java/org/orthomcl/shared/model/layout :: java code per data class for cluster layout
- OrthoMCLModel/Model/target/classes/org/orthomcl/shared/model/layout :: java class files for cluster layout