irodsupgrade 3.0 to 3.1

Stop irods just irods server keep the postgres running

#Move iRODS folder to iRODS3.0
#download irods3.1 check md5sum
untar
#patch postgres. 
cd iRODS
psql -d ICAT -U rods -f server/icat/patches/psg-patch-v3.0tov3.1.sql
#Copy old config file
cp ../iRODS3.0/config/irods.config config/.
#Fix GSI
sed -i 's/_..GSI_INSTALL_TYPE.//g' server/Makefile
sed -i 's/_..GSI_INSTALL_TYPE.//g' clients/fuse/Makefile
sed -i 's/_..GSI_INSTALL_TYPE.//g' clients/icommands/Makefile
#Run irodsupgrade follow instructions build iRODS
./irodsupgrade