Merge pull request #55 from OHDSI/ehr-doc-upd-feb24

added missing parts
OHDSI · Feb 23, 2024 · a666cec · a666cec
2 parents bc8c239 + 2832ec3
commit a666cec
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diff --git a/docs/OPTUM_PANTHER/Optum_Panther_Rx_Written_STEM.md b/docs/OPTUM_PANTHER/Optum_Panther_Rx_Written_STEM.md
@@ -23,7 +23,7 @@ description: "OPTUM EHR Prescriptions_Written table to STEM"
 | end_date |  | To find end_date, do start_date + days_supply-1 | | 
 | start_datetime | rx_time | Combine rx_date and rx_time into a datetime| |
 | end_datetime | | Start_date + days_supply-1 and set time to midnight | |
-| concept_id |ndc |Use the [SOURCE_TO_STANDARD](https://github.com/OHDSI/ETL-LambdaBuilder/blob/master/docs/Standard%20Queries/SOURCE_TO_STANDARD.sql) query to map the code to standard concept(s) with the following filters: <br> <br>  Where source_vocabulary_id = 'NDC'  and Target_standard_concept = 'S'  and target_invalid_reason is NULL and admin_date between valid_start_date and valid_end_date<br><br>If there is no mapping available, set concept_id to zero.| |
+| concept_id |ndc |Use the [SOURCE_TO_STANDARD](https://github.com/OHDSI/ETL-LambdaBuilder/blob/master/docs/Standard%20Queries/SOURCE_TO_STANDARD.sql) query to map the code to standard concept(s) with the following filters: <br> <br>  Where source_vocabulary_id = 'NDC'  and Target_standard_concept = 'S'  and target_invalid_reason is NULL and admin_date between valid_start_date and valid_end_date<br><br>If there is no mapping available, set concept_id to zero.| When mapping a prescription drug, map the 11-digit NDC code to SOURCE_CODE in OMOP vocab first. <br> If no mapping found, map the first 9 digits of NDC code to SOURCE_CODE. |
 |source_value| ndc |||
 | source_concept_id | ndc | Use the [SOURCE_TO_SOURCE](https://github.com/OHDSI/ETL-LambdaBuilder/blob/master/docs/Standard%20Queries/SOURCE_TO_SOURCE.sql) query to map the code to standard concept(s) with the following filters: <br> <br>  Where source_vocabulary_id = 'NDC'<br><br>If there is no mapping available, set concept_id to zero.| |
 | type_concept_id | 32838  | EHR Prescription | | 
@@ -56,4 +56,9 @@ description: "OPTUM EHR Prescriptions_Written table to STEM"
 | anatomic_site_source_value |  | | |
 | disease_status_source_value |  | | |
 | condition_status_concept_id | | | |
-| condition_status_source_value | | | |
+| condition_status_source_value | | | |
+
+## Change Log:
+
+### 07-Feb-2024
+- Added 11-digit/9-digit NDC rule
diff --git a/docs/OPTUM_PANTHER/Optum_Panther_death.md b/docs/OPTUM_PANTHER/Optum_Panther_death.md
@@ -7,6 +7,10 @@ description: "Death table mapping from Optum EHR patient table"
 
 ---
 
+## **Note**:
+
+A person’s death should be removed if any data available > 30 days after date_of_death
+
 # CDM Table: DEATH
 
 In Optum EHR this information will be sourced from the native **PATIENT** table. Only take records where **DECEASED_INDICATOR** = 1 and **DATE_OF_DEATH** is not blank. 
@@ -23,6 +27,9 @@ CAUSE_SOURCE_CONCEPT_ID|0|||
 
 ## Change Log:
 
+### 07-Feb-2024
+- Added note
+
 ### November 2, 2021
 - Changed DEATH_TYPE_CONCEPT_ID to 32519
 ---