Add support for historical data sorting #6906
Workflow file for this run
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| name: Build and Test | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - '**.md' | |
| - 'docs/**' | |
| - 'demo/**' | |
| - '.github/workflows/site.yml' | |
| jobs: | |
| build-tools: | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.pull_request.labels.*.name, 'ci-skip')" | |
| strategy: | |
| matrix: | |
| java: [ '11' ] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2.3.3 | |
| - name: Setup java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: ${{ matrix.java }} | |
| cache: 'maven' | |
| - name: Build tools | |
| run: mvn -B install --file fhir-tools -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build samples with condensed json | |
| run: mvn -B install --file fhir-examples -P condense-json -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build parent with condensed json | |
| run: mvn -B install --file fhir-parent -P integration,condense-json -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build sample generator | |
| run: mvn -B package --file fhir-examples-generator -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build benchmark | |
| run: mvn -B package --file fhir-benchmark -Dmaven.wagon.http.retryHandler.count=3 | |
| build: | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.pull_request.labels.*.name, 'ci-skip')" | |
| strategy: | |
| matrix: | |
| java: [ '11' ] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2.3.3 | |
| - name: Setup java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: ${{ matrix.java }} | |
| cache: 'maven' | |
| - name: Fetch target branch | |
| env: | |
| BASE: ${{ github['base_ref'] }} | |
| run: git fetch --no-tags --prune --depth=1 origin +refs/heads/${BASE}:refs/remotes/origin/${BASE} | |
| - name: Build tools and samples | |
| run: | | |
| mvn -B install --file fhir-tools --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B install --file fhir-examples --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build parent with tests | |
| env: | |
| BASE: origin/${{ github['base_ref'] }} | |
| run: | | |
| mvn -version | |
| model_paths=( | |
| fhir-model | |
| fhir-examples | |
| ) | |
| validation_paths=( | |
| fhir-validation | |
| fhir-profile/src/main | |
| fhir-term/src/main | |
| fhir-path/src/main | |
| fhir-model/src/main | |
| fhir-examples | |
| ) | |
| search_paths=( | |
| fhir-search | |
| fhir-examples | |
| ) | |
| jdbc_paths=( | |
| fhir-persistence-jdbc | |
| fhir-persistence-params | |
| fhir-search/src/main | |
| fhir-persistence/src/main | |
| fhir-persistence-schema/src/main | |
| fhir-examples | |
| ) | |
| PROFILES_ARR=(integration condense-json) | |
| if [ -n "$(git --no-pager diff --name-only ${BASE} ${GITHUB_SHA} -- ${model_paths[@]})" ]; then | |
| echo "Changes affect fhir-model, running ALL" | |
| PROFILES_ARR+=(model-all-tests) | |
| else | |
| echo "No changes affect fhir-model, running MINIMAL" | |
| fi | |
| if [ -n "$(git --no-pager diff --name-only ${BASE} ${GITHUB_SHA} -- ${validation_paths[@]})" ]; then | |
| echo "Changes affect fhir-validation, running ALL" | |
| PROFILES_ARR+=(validation-all-tests) | |
| else | |
| echo "No changes affect fhir-validation, running MINIMAL" | |
| fi | |
| if [ -n "$(git --no-pager diff --name-only ${BASE} ${GITHUB_SHA} -- ${search_paths[@]})" ]; then | |
| echo "Changes affect fhir-search, running ALL" | |
| PROFILES_ARR+=(search-all-tests) | |
| else | |
| echo "No changes affect fhir-search, running MINIMAL" | |
| fi | |
| if [ -n "$(git --no-pager diff --name-only ${BASE} ${GITHUB_SHA} -- ${jdbc_paths[@]})" ]; then | |
| echo "Changes affect fhir-persistence-jdbc, running ALL" | |
| PROFILES_ARR+=(jdbc-all-tests) | |
| else | |
| echo "No changes affect fhir-persistence-jdbc, running MINIMAL" | |
| fi | |
| # Convert the PROFILES_ARR array to a comma-delimited string | |
| PROFILES=$(IFS=, ; echo "${PROFILES_ARR[*]}") | |
| echo "Using profiles ${PROFILES}" | |
| mvn -B org.apache.maven.plugins:maven-dependency-plugin:3.1.2:go-offline -f fhir-parent --no-transfer-progress -DexcludeReactor=true -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B org.apache.maven.plugins:maven-dependency-plugin:3.1.2:resolve-plugins -f fhir-parent --no-transfer-progress -DexcludeReactor=true -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B package --file fhir-parent -P "${PROFILES}" --no-transfer-progress -Dmaven.wagon.httpconnectionManager.ttlSeconds=240 -Dmaven.wagon.http.retryHandler.count=3 | |
| e2e-tests: | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.event.pull_request.labels.*.name, 'ci-skip')" | |
| strategy: | |
| matrix: | |
| java: [ '11' ] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v2.3.3 | |
| - name: Setup java | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'temurin' | |
| java-version: ${{ matrix.java }} | |
| cache: 'maven' | |
| - name: Build tools and samples | |
| run: | | |
| mvn -B install --file fhir-tools --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B install --file fhir-examples --no-transfer-progress -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: Build parent without tests | |
| # As the e2e tests are the fastest, opting to put javadoc:javadoc in fhir-parent | |
| # The profile avoids UML diagram creation | |
| run: | | |
| JAVADOC_GOAL="" | |
| if [ "${{ matrix.java }}" = "11" ] | |
| then | |
| JAVADOC_GOAL=" -Pvalidate-javadoc javadoc:javadoc " | |
| fi | |
| mvn -B org.apache.maven.plugins:maven-dependency-plugin:3.1.2:go-offline -f fhir-parent --no-transfer-progress -DexcludeReactor=true -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B org.apache.maven.plugins:maven-dependency-plugin:3.1.2:resolve-plugins -f fhir-parent --no-transfer-progress -DexcludeReactor=true -Dmaven.wagon.http.retryHandler.count=3 | |
| mvn -B ${JAVADOC_GOAL} install --file fhir-parent -DskipTests -P include-fhir-igs,integration,condense-json --no-transfer-progress -Dmaven.wagon.httpconnectionManager.ttlSeconds=240 -Dmaven.wagon.http.retryHandler.count=3 | |
| - name: free disk space | |
| run: | | |
| # create and remove a 200 MB file to make sure we have the room needed later | |
| dd if=/dev/urandom oflag=direct of=balloon.dat bs=1024k count=200 | |
| rm -f balloon.dat | |
| sudo apt clean | |
| docker system prune -f | |
| df -h | |
| - name: Server Integration Tests | |
| env: | |
| # debian-based linux uses C.UTF-8 by default and Derby doesn't like that | |
| LC_ALL: en_US.UTF-8 | |
| run: | | |
| export WORKSPACE=${GITHUB_WORKSPACE} | |
| build/pre-integration-test.sh | |
| env | |
| mvn -B test -DskipTests=false -f fhir-server-test --no-transfer-progress -Dmaven.wagon.httpconnectionManager.ttlSeconds=240 -Dmaven.wagon.http.retryHandler.count=3 | |
| build/post-integration-test.sh | |
| - name: Gather error logs | |
| if: failure() | |
| run: | | |
| it_results=SIT/integration-test-results | |
| rm -fr ${it_results} 2>/dev/null | |
| mkdir -p ${it_results}/server-logs | |
| mkdir -p ${it_results}/fhir-server-test | |
| cp pre-it-logs.zip ${it_results}/ | |
| echo "Gathering post-test server logs..." | |
| cp -r SIT/wlp/usr/servers/defaultServer/logs ${it_results}/server-logs | |
| echo "Gathering integration test output" | |
| cp -r ${GITHUB_WORKSPACE}/fhir-server-test/target/surefire-reports/* ${it_results}/fhir-server-test || true | |
| - name: Upload logs | |
| if: always() | |
| uses: actions/upload-artifact@v2.2.0 | |
| with: | |
| name: integration-test-results-${{ matrix.java }} | |
| path: SIT/integration-test-results | |
| concurrency: | |
| group: build-${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true |