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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 265 repositories
  • zarrcade Public

    Create web-based OME-Zarr galleries

    JaneliaSciComp/zarrcade’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Oct 22, 2024
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 4 BSD-3-Clause 2 0 5 Updated Oct 22, 2024
  • workstation Public

    Janelia Workstation

    JaneliaSciComp/workstation’s past year of commit activity
    Java 23 11 0 11 Updated Oct 21, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 23 0 Updated Oct 21, 2024
  • neuronbridge Public

    EM/LM neuron search

    JaneliaSciComp/neuronbridge’s past year of commit activity
    JavaScript 4 BSD-3-Clause 1 0 7 Updated Oct 21, 2024
  • jacs-cm Public

    JACS Configuration Management

    JaneliaSciComp/jacs-cm’s past year of commit activity
    XSLT 8 3 17 2 Updated Oct 21, 2024
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 20 BSD-3-Clause 3 6 1 Updated Oct 21, 2024
  • janelia-unity-toolkit Public

    Packages for the Unity game engine, emphasizing animal studies in VR.

    JaneliaSciComp/janelia-unity-toolkit’s past year of commit activity
    C# 16 10 5 2 Updated Oct 21, 2024
  • jacs-storage Public

    JADE file storage services

    JaneliaSciComp/jacs-storage’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 1 Updated Oct 18, 2024
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 18 BSD-2-Clause 10 14 1 Updated Oct 18, 2024
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