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gromacs-blueprint.yaml.m4
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gromacs-blueprint.yaml.m4
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---
tosca_definitions_version: cloudify_dsl_1_3
description: >
Gromacs portal setup via FedCloud OCCI and Puppet.
dnl *** From gromacs-inputs.yaml.m4 take only macros, drop regular texts.
divert(`-1')dnl
include(gromacs-inputs.yaml.m4)dnl
divert(`0')dnl
define(_NODE_SERVER_, ifdef(`_CFM_',`gromacs.nodes.MonitoredServer',`gromacs.nodes.Server'))dnl
define(_NODE_HOSTPOOLSERVER_, ifdef(`_CFM_',`gromacs.nodes.MonitoredHostPoolServer',`gromacs.nodes.HostPoolServer'))dnl
define(_NODE_TORQUESERVER_, ifdef(`_CFM_',`gromacs.nodes.MonitoredTorqueServer',`gromacs.nodes.TorqueServer'))dnl
define(_NODE_WEBSERVER_, ifdef(`_CFM_',`gromacs.nodes.MonitoredWebServer', `gromacs.nodes.WebServer'))dnl
define(_NODE_SWCOMPONENT_, ifdef(`_CFM_',`gromacs.nodes.MonitoredSoftwareComponent', `gromacs.nodes.SoftwareComponent'))dnl
define(_NAME_OLINNODE_, ifelse(_PROVISIONER_,`hostpool',`olinNodeHostPool',`olinNode'))dnl
define(_NAME_WORKERNODE_, ifelse(_PROVISIONER_,`hostpool',`workerNodeHostPool',`workerNode'))dnl
define(_NAME_TORQUESERVER_, ifelse(_PROVISIONER_,`hostpool',`torqueServerHostPool',`torqueServer'))dnl
# Note: plugin/version installation for CFM handled
# in Makefile by target "cfm-plugins"
imports:
- http://www.getcloudify.org/spec/cloudify/4.3/types.yaml
- http://www.getcloudify.org/spec/diamond-plugin/1.3.1/plugin.yaml
- https://raw.githubusercontent.com/cloudify-cosmo/cloudify-host-pool-plugin/1.5/plugin.yaml
- https://raw.githubusercontent.com/ICS-MU/westlife-cloudify-occi-plugin/0.0.15/plugin.yaml
- https://raw.githubusercontent.com/ICS-MU/westlife-cloudify-fabric-plugin/1.5.1.1/plugin.yaml
- https://raw.githubusercontent.com/ICS-MU/westlife-cloudify-westlife-workflows/master/plugin.yaml
- types/puppet.yaml
- types/server.yaml
- types/softwarecomponent.yaml
- types/torqueserver.yaml
- types/webserver.yaml
inputs:
# OCCI
occi_endpoint:
default: ''
type: string
occi_auth:
default: ''
type: string
occi_username:
default: ''
type: string
occi_password:
default: ''
type: string
occi_user_cred:
default: ''
type: string
occi_ca_path:
default: ''
type: string
occi_voms:
default: False
type: boolean
# Host pool
hostpool_service_url:
default: ''
type: string
hostpool_username:
default: 'root'
type: string
hostpool_private_key:
default: ''
type: string
# contextualization
cc_username:
default: cfy
type: string
cc_public_key:
type: string
cc_private_key:
type: string
cc_data:
default: {}
# VM parameters
olin_occi_os_tpl:
type: string
olin_occi_resource_tpl:
type: string
olin_occi_availability_zone:
type: string
olin_occi_network:
type: string
olin_occi_network_pool:
type: string
olin_occi_scratch_size:
type: integer
olin_hostpool_tags:
default: []
worker_occi_os_tpl:
type: string
worker_occi_resource_tpl:
type: string
worker_occi_availability_zone:
type: string
worker_occi_network:
type: string
worker_occi_network_pool:
type: string
worker_occi_scratch_size:
type: integer
worker_hostpool_tags:
default: []
# Application parameters
cuda_release:
type: string
gromacs_portal_servername:
type: string
gromacs_portal_ssl_enabled:
type: boolean
gromacs_portal_gromacs_cpu_nr:
type: integer
gromacs_portal_admin_email:
type: string
gromacs_portal_gromacs_cpu_nr:
type: integer
gromacs_portal_user_storetime:
type: integer
gromacs_portal_user_maxjob:
type: integer
gromacs_portal_user_simtime:
type: float
gromacs_portal_dyndns_enabled:
type: boolean
gromacs_portal_dyndns_hostname:
type: string
gromacs_portal_dyndns_server:
type: string
gromacs_portal_dyndns_login:
type: string
gromacs_portal_dyndns_password:
type: string
gromacs_portal_dyndns_ssl:
type: string
gromacs_portal_auth_enabled:
type: boolean
gromacs_portal_auth_service_key_b64:
type: string
gromacs_portal_auth_service_cert_b64:
type: string
gromacs_portal_auth_service_meta_b64:
type: string
gromacs_user_public_key:
type: string
gromacs_user_private_key_b64:
type: string
dsl_definitions:
occi_configuration: &occi_configuration
endpoint: { get_input: occi_endpoint }
auth: { get_input: occi_auth }
username: { get_input: occi_username }
password: { get_input: occi_password }
user_cred: { get_input: occi_user_cred }
ca_path: { get_input: occi_ca_path }
voms: { get_input: occi_voms }
cloud_configuration: &cloud_configuration
username: { get_input: cc_username }
public_key: { get_input: cc_public_key }
data: { get_input: cc_data }
fabric_env: &fabric_env
user: { get_input: cc_username }
key: { get_input: cc_private_key }
fabric_env_hostpool: &fabric_env_hostpool
user: { get_input: hostpool_username }
key: { get_input: hostpool_private_key }
agent_configuration: &agent_configuration
install_method: remote
user: { get_input: cc_username }
key: { get_input: cc_private_key }
agent_configuration_hostpool: &agent_configuration_hostpool
install_method: remote
user: { get_input: hostpool_username }
key: { get_input: hostpool_private_key }
puppet_config: &puppet_config
repo: 'https://yum.puppetlabs.com/puppet5/puppet5-release-el-7.noarch.rpm'
package: 'puppet-agent'
download: resources/puppet.tar.gz
plugin_resources: &plugin_resources
description: >
Holds any archives that should be uploaded to the manager.
default:
- 'https://github.com/ICS-MU/westlife-cloudify-occi-plugin/releases/download/0.0.14/cloudify_occi_plugin-0.0.14-py27-none-linux_x86_64.wgn'
node_templates:
ifelse(_PROVISIONER_,`hostpool',`
### Predeployed nodes #######################################################
# predeployed olin (frontend)
olinNodeHostPool:
type: _NODE_HOSTPOOLSERVER_
properties:
agent_config: *agent_configuration_hostpool
fabric_env: *fabric_env_hostpool
hostpool_service_url: { get_input: hostpool_service_url }
filters:
tags: { get_input: olin_hostpool_tags }
gromacsPortalHostPool:
type: _NODE_WEBSERVER_
instances:
deploy: 1
properties:
fabric_env: *fabric_env_hostpool
puppet_config:
<<: *puppet_config
manifests:
start: manifests/gromacs_portal.pp
delete: manifests/gromacs_portal.pp
hiera:
gromacs::portal::servername: { get_input: gromacs_portal_servername }
gromacs::portal::ssl_enabled: { get_input: gromacs_portal_ssl_enabled }
gromacs::portal::admin_email: { get_input: gromacs_portal_admin_email }
gromacs::portal::gromacs_cpu_nr: { get_input: gromacs_portal_gromacs_cpu_nr }
gromacs::portal::user_storetime: { get_input: gromacs_portal_user_storetime }
gromacs::portal::user_maxjob: { get_input: gromacs_portal_user_maxjob }
gromacs::portal::user_simtime: { get_input: gromacs_portal_user_simtime }
gromacs::portal::auth_enabled: { get_input: gromacs_portal_auth_enabled }
gromacs::portal::auth_service_key_b64: { get_input: gromacs_portal_auth_service_key_b64 }
gromacs::portal::auth_service_cert_b64: { get_input: gromacs_portal_auth_service_cert_b64 }
gromacs::portal::auth_service_meta_b64: { get_input: gromacs_portal_auth_service_meta_b64 }
gromacs::portal::dyndns_enabled: { get_input: gromacs_portal_dyndns_enabled }
gromacs::portal::dyndns_hostname: { get_input: gromacs_portal_dyndns_hostname }
gromacs::portal::dyndns_server: { get_input: gromacs_portal_dyndns_server }
gromacs::portal::dyndns_login: { get_input: gromacs_portal_dyndns_login }
gromacs::portal::dyndns_password: { get_input: gromacs_portal_dyndns_password }
gromacs::portal::dyndns_ssl: { get_input: gromacs_portal_dyndns_ssl }
gromacs::user::public_key: { get_input: gromacs_user_public_key }
gromacs::user::private_key_b64: { get_input: gromacs_user_private_key_b64 }
westlife::postfix::root_recipient: { get_input: gromacs_portal_admin_email }
westlife::postfix::gromacs_recipient: { get_input: gromacs_portal_admin_email }
#westlife::volume::device: /dev/vdc
westlife::volume::fstype: ext4
westlife::volume::mountpoint: /data
westlife::volume::mode: "1777"
relationships:
- type: cloudify.relationships.contained_in
target: olinNodeHostPool
- type: gromacs.relationships.puppet.connected_to
target: torqueServerHostPool
torqueServerHostPool:
type: _NODE_TORQUESERVER_
instances:
deploy: 1
properties:
fabric_env: *fabric_env_hostpool
puppet_config:
<<: *puppet_config
manifests:
start: manifests/torque_server.pp
delete: manifests/torque_server.pp
relationships:
- type: cloudify.relationships.contained_in
target: olinNodeHostPool
# predeployed worker node
workerNodeHostPool:
type: _NODE_HOSTPOOLSERVER_
properties:
agent_config: *agent_configuration_hostpool
fabric_env: *fabric_env_hostpool
hostpool_service_url: { get_input: hostpool_service_url }
filters:
tags: { get_input: worker_hostpool_tags }
torqueMomHostPool:
type: _NODE_SWCOMPONENT_
instances:
deploy: 1
properties:
fabric_env: *fabric_env_hostpool
puppet_config:
<<: *puppet_config
manifests:
start: manifests/torque_mom.pp
delete: manifests/torque_mom.pp
hiera:
westlife::volume::mountpoint: /scratch
westlife::volume::mode: "1777"
relationships:
- type: cloudify.relationships.contained_in
target: workerNodeHostPool
- type: cloudify.relationships.depends_on
target: gromacsHostPool
- type: gromacs.relationships.puppet.connected_to
target: torqueServerHostPool
source_interfaces:
cloudify.interfaces.relationship_lifecycle:
postconfigure:
inputs:
manifest: manifests/torque_mom.pp # nastaveni jmena/np mom na serveru
unlink:
inputs:
manifest: manifests/torque_mom.pp # zruseni np mom na serveru
target_interfaces:
cloudify.interfaces.relationship_lifecycle:
preconfigure:
inputs:
manifest: manifests/torque_server.pp # nastaveni ::torque_sever_name
establish:
inputs:
manifest: manifests/torque_server.pp # rekonfigurace serveru
unlink:
inputs:
manifest: manifests/torque_server.pp # rekonfigurace serveru
gromacsHostPool:
type: _NODE_SWCOMPONENT_
instances:
deploy: 1
properties:
fabric_env: *fabric_env_hostpool
puppet_config:
<<: *puppet_config
manifests:
start: manifests/gromacs.pp
delete: manifests/gromacs.pp
hiera:
cuda::release: { get_input: cuda_release }
gromacs::user::public_key: { get_input: gromacs_user_public_key }
gromacs::user::private_key_b64: { get_input: gromacs_user_private_key_b64 }
relationships:
- type: cloudify.relationships.contained_in
target: workerNodeHostPool
',_PROVISIONER_,`occi',`
### OCCI nodes #############################################################
# olin (frontend)
olinNode:
type: _NODE_SERVER_
properties:
name: "Gromacs all-in-one server node"
resource_config:
os_tpl: { get_input: olin_occi_os_tpl }
resource_tpl: { get_input: olin_occi_resource_tpl }
availability_zone: { get_input: olin_occi_availability_zone }
network: { get_input: olin_occi_network }
network_pool: { get_input: olin_occi_network_pool }
agent_config: *agent_configuration
cloud_config: *cloud_configuration
occi_config: *occi_configuration
fabric_env: *fabric_env
olinStorage:
type: cloudify.occi.nodes.Volume
properties:
size: { get_input: olin_occi_scratch_size }
availability_zone: { get_input: olin_occi_availability_zone }
occi_config: *occi_configuration
interfaces:
cloudify.interfaces.lifecycle:
delete:
inputs:
wait_finish: false
relationships:
- type: cloudify.occi.relationships.volume_contained_in_server
target: olinNode
target_interfaces:
cloudify.interfaces.relationship_lifecycle:
unlink:
inputs:
skip_action: true
gromacsPortal:
type: _NODE_WEBSERVER_
instances:
deploy: 1
properties:
fabric_env: *fabric_env
puppet_config:
<<: *puppet_config
manifests:
start: manifests/gromacs_portal.pp
hiera:
gromacs::portal::servername: { get_input: gromacs_portal_servername }
gromacs::portal::ssl_enabled: { get_input: gromacs_portal_ssl_enabled }
gromacs::portal::admin_email: { get_input: gromacs_portal_admin_email }
gromacs::portal::gromacs_cpu_nr: { get_input: gromacs_portal_gromacs_cpu_nr }
gromacs::portal::user_storetime: { get_input: gromacs_portal_user_storetime }
gromacs::portal::user_maxjob: { get_input: gromacs_portal_user_maxjob }
gromacs::portal::user_simtime: { get_input: gromacs_portal_user_simtime }
gromacs::portal::auth_enabled: { get_input: gromacs_portal_auth_enabled }
gromacs::portal::auth_service_key_b64: { get_input: gromacs_portal_auth_service_key_b64 }
gromacs::portal::auth_service_cert_b64: { get_input: gromacs_portal_auth_service_cert_b64 }
gromacs::portal::auth_service_meta_b64: { get_input: gromacs_portal_auth_service_meta_b64 }
gromacs::portal::dyndns_enabled: { get_input: gromacs_portal_dyndns_enabled }
gromacs::portal::dyndns_hostname: { get_input: gromacs_portal_dyndns_hostname }
gromacs::portal::dyndns_server: { get_input: gromacs_portal_dyndns_server }
gromacs::portal::dyndns_login: { get_input: gromacs_portal_dyndns_login }
gromacs::portal::dyndns_password: { get_input: gromacs_portal_dyndns_password }
gromacs::portal::dyndns_ssl: { get_input: gromacs_portal_dyndns_ssl }
gromacs::user::public_key: { get_input: gromacs_user_public_key }
gromacs::user::private_key_b64: { get_input: gromacs_user_private_key_b64 }
westlife::postfix::root_recipient: { get_input: gromacs_portal_admin_email }
westlife::postfix::gromacs_recipient: { get_input: gromacs_portal_admin_email }
westlife::volume::device: /dev/vdc
westlife::volume::fstype: ext4
westlife::volume::mountpoint: /data
westlife::volume::mode: "1777"
relationships:
- type: cloudify.relationships.contained_in
target: olinNode
- type: gromacs.relationships.puppet.connected_to
target: torqueServer
- type: cloudify.relationships.depends_on
target: olinStorage
torqueServer:
type: _NODE_TORQUESERVER_
instances:
deploy: 1
properties:
fabric_env: *fabric_env
puppet_config:
<<: *puppet_config
manifests:
start: manifests/torque_server.pp
relationships:
- type: cloudify.relationships.contained_in
target: olinNode
- type: cloudify.relationships.depends_on
target: olinStorage
# worker node running on cloud (OCCI)
workerNode:
type: _NODE_SERVER_
properties:
name: "Gromacs worker node"
resource_config:
os_tpl: { get_input: worker_occi_os_tpl }
resource_tpl: { get_input: worker_occi_resource_tpl }
availability_zone: { get_input: worker_occi_availability_zone }
network: { get_input: worker_occi_network }
network_pool: { get_input: worker_occi_network_pool }
agent_config: *agent_configuration
cloud_config: *cloud_configuration
occi_config: *occi_configuration
fabric_env: *fabric_env
workerScratch:
type: cloudify.occi.nodes.Volume
properties:
size: { get_input: worker_occi_scratch_size }
availability_zone: { get_input: worker_occi_availability_zone }
occi_config: *occi_configuration
interfaces:
cloudify.interfaces.lifecycle:
delete:
inputs:
wait_finish: false
relationships:
- type: cloudify.occi.relationships.volume_contained_in_server
target: workerNode
target_interfaces:
cloudify.interfaces.relationship_lifecycle:
unlink:
inputs:
skip_action: true
torqueMom:
type: _NODE_SWCOMPONENT_
instances:
deploy: 1
properties:
fabric_env: *fabric_env
puppet_config:
<<: *puppet_config
manifests:
start: manifests/torque_mom.pp
hiera:
westlife::volume::device: /dev/vdc
westlife::volume::fstype: ext4
westlife::volume::mountpoint: /scratch
westlife::volume::mode: "1777"
relationships:
- type: cloudify.relationships.contained_in
target: workerNode
- type: cloudify.relationships.depends_on
target: workerScratch
- type: cloudify.relationships.depends_on
target: gromacs
- type: gromacs.relationships.puppet.connected_to
target: torqueServer
source_interfaces:
cloudify.interfaces.relationship_lifecycle:
postconfigure:
inputs:
manifest: manifests/torque_mom.pp # nastaveni jmena/np mom na serveru
unlink:
inputs:
manifest: manifests/torque_mom.pp # zruseni np mom na serveru
target_interfaces:
cloudify.interfaces.relationship_lifecycle:
preconfigure:
inputs:
manifest: manifests/torque_server.pp # nastaveni ::torque_sever_name
establish:
inputs:
manifest: manifests/torque_server.pp # rekonfigurace serveru
unlink:
inputs:
manifest: manifests/torque_server.pp # rekonfigurace serveru
gromacs:
type: _NODE_SWCOMPONENT_
instances:
deploy: 1
properties:
fabric_env: *fabric_env
puppet_config:
<<: *puppet_config
manifests:
start: manifests/gromacs.pp
hiera:
cuda::release: { get_input: cuda_release }
gromacs::user::public_key: { get_input: gromacs_user_public_key }
gromacs::user::private_key_b64: { get_input: gromacs_user_private_key_b64 }
relationships:
- type: cloudify.relationships.contained_in
target: workerNode
- type: cloudify.relationships.depends_on
target: workerScratch
',`errprint(Missing definition of _PROVISIONER_ in the inputs
)m4exit(1)')
groups:
workerNodes:
members: [_NAME_WORKERNODE_]
healWorkerNodes:
members: [_NAME_WORKERNODE_]
#members: [workerNodes]
policies:
simple_autoheal_policy:
type: cloudify.policies.types.host_failure
properties:
service:
- .*_NAME_WORKERNODE_.*.cpu.total.system
interval_between_workflows: 1800
triggers:
auto_heal_trigger:
type: cloudify.policies.triggers.execute_workflow
parameters:
workflow: heal
workflow_parameters:
node_instance_id: { 'get_property': [ SELF, node_id ] }
diagnose_value: { 'get_property': [ SELF, diagnose ] }
scaleWorkerNodes:
members: [_NAME_TORQUESERVER_]
policies:
out:
type: cloudify.policies.types.threshold
properties:
stability_time: 600
upper_bound: true
threshold: 2
service: '.*torque.jobs.queued$'
interval_between_workflows: 1800
triggers:
execute_scale_workflow:
type: cloudify.policies.triggers.execute_workflow
parameters:
workflow: scale_min_max
workflow_parameters:
delta: 1
scalable_entity_name: workerNodes
scale_compute: true
max_instances: _WORKERS_MAX_
in:
type: cloudify.policies.types.threshold
properties:
stability_time: 600
upper_bound: false
threshold: 0
service: '.*torque.nodes.busy$'
interval_between_workflows: 1800
triggers:
execute_scale_workflow:
type: cloudify.policies.triggers.execute_workflow
parameters:
workflow: scale_min_max
workflow_parameters:
delta: -1
scalable_entity_name: workerNodes
scale_compute: true
min_instances: _WORKERS_MIN_
policies:
scaleWorkerNodes:
type: cloudify.policies.scaling
targets: [workerNodes]
properties:
default_instances: _WORKERS_
min_instances: _WORKERS_MIN_
max_instances: _WORKERS_MAX_
outputs:
web_endpoint:
description: Gromacs portal endpoint
value: { concat: ['http://', { get_attribute: [_NAME_OLINNODE_, ip] }] }
# vim: set syntax=yaml