Custom run of TAF #300
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| name: Custom run of TAF | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| suite: | |
| description: 'Test suite to run: "full" for full run, "smoke" for smoke tests' | |
| required: true | |
| default: 'full' | |
| biapi: | |
| description: 'Branch of bi-api to use' | |
| required: true | |
| default: 'develop' | |
| biweb: | |
| description: 'Branch of bi-web to use' | |
| required: true | |
| default: 'develop' | |
| bi_docker_stack: | |
| description: 'Branch of bi-docker-stack to use' | |
| required: true | |
| default: 'develop' | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| node-version: [16.x] | |
| # See supported Node.js release schedule at https://nodejs.org/en/about/releases/ | |
| runs-on: ${{ matrix.os }} | |
| name: "Testing bi-web: ${{ github.event.inputs.biweb }}, bi-api: ${{ github.event.inputs.biapi }}, bi-docker-stack: ${{ github.event.inputs.bi_docker_stack }}" | |
| env: | |
| USER_ID: 1001 | |
| GROUP_ID: 1001 | |
| OAUTH_CLIENT_ID: APP-ZX6M8LSAN3YIIAQ5 | |
| OAUTH_CLIENT_SECRET: ${{ secrets.OAUTH_CLIENT_SECRET }} | |
| JWT_SECRET: ${{ secrets.JWT_SECRET }} | |
| JWT_DOMAIN: localhost | |
| OAUTH_AUTH_URL: https://sandbox.orcid.org/oauth/authorize | |
| OAUTH_TOKEN_URL: https://sandbox.orcid.org/oauth/token | |
| OAUTH_OPENID_ISSUER: https://sandbox.orcid.org | |
| OAUTH_OPENID_JWKSURI: https://sandbox.orcid.org/oauth/jwks | |
| OAUTH_OPENID_USERINFOURL: https://sandbox.orcid.org/oauth/userinfo | |
| GITHUB_ACTOR: rob-ouser-bi | |
| GITHUB_TOKEN: ${{ secrets.ROB_OUSER_TOKEN }} | |
| DB_PASSWORD: postgres | |
| DB_SERVER: dbserver:5432 | |
| DB_NAME: bidb | |
| DB_USER: postgres | |
| ADMIN_ORCID: 0000-0003-0437-8310 | |
| API_INTERNAL_PORT: 8081 | |
| API_INTERNAL_TEST_PORT: 8082 | |
| BRAPI_SERVER_PORT: 8080 | |
| BRAPI_DEFAULT_URL: http://brapiserver:8080 | |
| BRAPI_REFERENCE_SOURCE: breeding-insight.net | |
| BRAPI_DB_SERVER: dbserver:5432 | |
| BRAPI_DB: postgres | |
| BRAPI_DB_USER: postgres | |
| BRAPI_DB_PASSWORD: postgres | |
| WEB_BASE_URL: http://localhost | |
| API_BASE_URL: http://localhost | |
| REGISTERED_DOMAIN: localhost | |
| EMAIL_RELAY_HOST: mailhog | |
| EMAIL_RELAY_PORT: 1025 | |
| EMAIL_FROM: bidevteam@cornell.edu | |
| GIGWA_HOST: http://localhost:5080/ | |
| GIGWA_USER: gigwadmin | |
| GIGWA_PASSWORD: nimda | |
| GIGWA_MONGO_USER: mongo | |
| GIGWA_MONGO_PASSWORD: mongo | |
| AWS_REGION: us-east-1 | |
| AWS_ACCESS_KEY_ID: test | |
| AWS_SECRET_KEY: test | |
| AWS_S3_ENDPOINT: http://localhost:4566 | |
| AWS_GENO_BUCKET: breedinginsight.org-test | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Use Node.js ${{ matrix.node-version }} | |
| uses: actions/setup-node@v2 | |
| with: | |
| node-version: ${{ matrix.node-version }} | |
| #check out docker | |
| - name: Docker checkout (private) | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Breeding-Insight/bi-docker-stack | |
| ref: ${{ github.event.inputs.bi_docker_stack }} | |
| submodules: recursive | |
| token: ${{ secrets.DOCKERPATH }} | |
| path: bi-docker-stack | |
| - name: Update bi-api Branch | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Breeding-Insight/bi-api | |
| ref: ${{ github.event.inputs.biapi }} | |
| path: bi-docker-stack/bi-api | |
| - name: Update bi-web Branch | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Breeding-Insight/bi-web | |
| ref: ${{ github.event.inputs.biweb }} | |
| path: bi-docker-stack/bi-web | |
| - run: npm install | |
| - name: Set up debug for github actions | |
| run: npm install --save-prod @actions/github @actions/core | |
| - name: Set up JDK 13 | |
| uses: actions/setup-java@v1.4.3 | |
| with: | |
| java-version: 13 | |
| #from bi-docker-stack | |
| - run: docker compose -f bi-docker-stack/docker-compose.yml -f bi-docker-stack/docker-compose-redis.yml -f bi-docker-stack/docker-compose-gigwa.yml -f bi-docker-stack/docker-compose-ci.yml up --build -d | |
| - name: Set up Chrome | |
| uses: browser-actions/setup-chrome@latest | |
| with: | |
| chrome-version: 122 | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Run Chrome | |
| if: matrix.os == 'ubuntu-latest' | |
| run: chrome --version | |
| - name: Sleep to ensure docker set up | |
| run: sleep 180s | |
| shell: bash | |
| - name: Set up required bidb data for tests | |
| run: | | |
| docker cp populate-taf-data.sql bidb:/populate-taf-data.sql | |
| docker exec bidb psql -U postgres -a -f populate-taf-data.sql -d bidb | |
| - name: Set up brapi data | |
| run: | | |
| trailMixId=$( docker exec bidb psql -U postgres -d bidb -t -c "SELECT id FROM program WHERE name='Trail Mix'" ) | |
| snacksId=$( docker exec bidb psql -U postgres -d bidb -t -c "SELECT id FROM program WHERE name='Snacks'" ) | |
| snacksId="$(echo -e "${snacksId}" | sed -e 's/^[[:space:]]*//')" | |
| trailMixId="$(echo -e "${trailMixId}" | sed -e 's/^[[:space:]]*//')" | |
| docker ps -a | |
| docker logs brapi-server | |
| docker logs biapi | |
| docker logs biweb | |
| docker inspect --format "{{json .State.Health }}" brapi-server | jq | |
| docker exec brapi-server curl --header "Content-Type: application/json;charset=UTF-8" -v -d '[{"programName":"Snacks","externalReferences":[{"referenceSource":"breeding-insight.net","referenceID":"'"$snacksId"'"}]}]' http://localhost:8080/brapi/v2/programs | |
| docker exec brapi-server curl --header "Content-Type: application/json;charset=UTF-8" -v -d '[{"programName":"Trail Mix","externalReferences":[{"referenceSource":"breeding-insight.net","referenceID":"'"$trailMixId"'"}]}]' http://localhost:8080/brapi/v2/programs | |
| - name: Run tests on Chrome (full) | |
| if: github.event.inputs.suite=='full' | |
| run: npm run test:chromeWeekly | |
| - name: Run tests on Chrome (smoke tests) | |
| if: (github.event.inputs.suite=='smoke') | |
| run: npm run test:chromeDaily | |
| - id: biWebBranch | |
| run: INPUT=${{ github.event.inputs.biweb }} && echo "::set-output name=branch::${INPUT/\//-}" | |
| - id: biAPIBranch | |
| run: INPUT=${{ github.event.inputs.biapi }} && echo "::set-output name=branch::${INPUT/\//-}" | |
| - name: Publish Report Artifact | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: cucumber-report-web-${{ steps.biWebBranch.outputs.branch }}-api-${{ steps.biAPIBranch.outputs.branch }}-${{ github.run_number }} | |
| path: ${{ github.workspace }}/report/* | |
| - name: Test end of run container status | |
| if: always() | |
| run: | | |
| docker logs brapi-server | |
| docker logs biapi | |
| docker logs biweb |