From 98f6950c94ea5bddcc92aae0038a9ce0dd3935d7 Mon Sep 17 00:00:00 2001 From: zhenkewu Date: Tue, 30 Jan 2024 19:30:14 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20zhenkewu?= =?UTF-8?q?/baker@a20f4bd7970e04d8da0e560590db8aec0e3ebb01=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/baker_demo.html | 4 ++-- articles/index.html | 2 +- authors.html | 2 +- index.html | 4 ++-- news/index.html | 6 +++++- pkgdown.yml | 2 +- reference/H.html | 2 +- reference/I2symb.html | 2 +- reference/Imat2cat.html | 2 +- reference/NA2dot.html | 2 +- reference/add_meas_BrS_case_Nest_Slice.html | 2 +- .../add_meas_BrS_case_Nest_Slice_jags.html | 2 +- reference/add_meas_BrS_case_NoNest_Slice.html | 2 +- .../add_meas_BrS_case_NoNest_Slice_jags.html | 2 +- ...d_meas_BrS_case_NoNest_reg_Slice_jags.html | 2 +- ...est_reg_discrete_predictor_Slice_jags.html | 2 +- reference/add_meas_BrS_ctrl_Nest_Slice.html | 2 +- reference/add_meas_BrS_ctrl_NoNest_Slice.html | 2 +- ...d_meas_BrS_ctrl_NoNest_reg_Slice_jags.html | 2 +- ...est_reg_discrete_predictor_Slice_jags.html | 2 +- reference/add_meas_BrS_param_Nest_Slice.html | 2 +- .../add_meas_BrS_param_Nest_Slice_jags.html | 2 +- ...dd_meas_BrS_param_Nest_reg_Slice_jags.html | 2 +- .../add_meas_BrS_param_NoNest_Slice.html | 2 +- .../add_meas_BrS_param_NoNest_Slice_jags.html | 2 +- ..._meas_BrS_param_NoNest_reg_Slice_jags.html | 2 +- ...est_reg_discrete_predictor_Slice_jags.html | 2 +- .../add_meas_BrS_subclass_Nest_Slice.html | 2 +- reference/add_meas_SS_case.html | 2 +- reference/add_meas_SS_param.html | 2 +- reference/as.matrix_or_vec.html | 2 +- reference/assign_model.html | 2 +- reference/baker.html | 2 +- reference/beta_parms_from_quantiles.html | 2 +- reference/beta_plot.html | 2 +- reference/bin2dec.html | 2 +- reference/check_dir_create.html | 2 +- reference/clean_combine_subsites.html | 2 +- reference/clean_perch_data.html | 2 +- reference/combine_data_nplcm.html | 2 +- reference/compute_logOR_single_cause.html | 2 +- reference/compute_marg_PR_nested_reg.html | 2 +- .../compute_marg_PR_nested_reg_array.html | 2 +- reference/create_bugs_regressor_Eti.html | 2 +- reference/create_bugs_regressor_FPR.html | 2 +- reference/data_nplcm_noreg.html | 2 +- reference/data_nplcm_reg_nest.html | 2 +- reference/delete_start_with.html | 2 +- reference/dm_Rdate_Eti.html | 2 +- reference/dm_Rdate_FPR.html | 2 +- reference/expit.html | 2 +- reference/extract_data_raw.html | 2 +- reference/get_coverage.html | 2 +- reference/get_direct_bias.html | 2 +- reference/get_fitted_mean_nested.html | 2 +- reference/get_fitted_mean_no_nested.html | 2 +- reference/get_individual_data.html | 2 +- reference/get_individual_prediction-1.png | Bin 41701 -> 41317 bytes reference/get_individual_prediction.html | 4 ++-- reference/get_latent_seq.html | 2 +- reference/get_marginal_rates_nested.html | 2 +- reference/get_marginal_rates_no_nested.html | 2 +- reference/get_metric.html | 2 +- reference/get_pEti_samp.html | 2 +- reference/get_plot_num.html | 2 +- reference/get_plot_pos.html | 2 +- reference/get_postsd.html | 2 +- reference/get_top_pattern.html | 2 +- reference/has_non_basis.html | 2 +- reference/index.html | 2 +- reference/init_latent_jags_multipleSS.html | 2 +- .../insert_bugfile_chunk_noreg_etiology.html | 2 +- .../insert_bugfile_chunk_noreg_meas.html | 2 +- ...chunk_reg_discrete_predictor_etiology.html | 2 +- ...nk_reg_discrete_predictor_nonest_meas.html | 2 +- .../insert_bugfile_chunk_reg_etiology.html | 2 +- .../insert_bugfile_chunk_reg_nest_meas.html | 2 +- .../insert_bugfile_chunk_reg_nonest_meas.html | 2 +- reference/is.error.html | 2 +- reference/is_discrete.html | 2 +- reference/is_intercept_only.html | 2 +- reference/is_jags_folder.html | 2 +- reference/is_length_all_one.html | 2 +- reference/jags2_baker.html | 2 +- reference/line2user.html | 2 +- reference/loadOneName.html | 2 +- reference/logOR.html | 2 +- reference/logit.html | 2 +- reference/logsumexp.html | 2 +- reference/lookup_quality.html | 2 +- reference/make_filename.html | 2 +- reference/make_foldername.html | 2 +- reference/make_list.html | 2 +- reference/make_meas_object.html | 2 +- reference/make_numbered_list.html | 2 +- reference/make_template.html | 2 +- reference/marg_H.html | 2 +- reference/match_cause.html | 2 +- reference/merge_lists.html | 2 +- reference/my_reorder.html | 2 +- reference/nplcm.html | 4 ++-- reference/nplcm_fit_NoReg.html | 2 +- reference/nplcm_fit_Reg_Nest.html | 2 +- reference/nplcm_fit_Reg_NoNest.html | 2 +- ...lcm_fit_Reg_discrete_predictor_NoNest.html | 2 +- reference/nplcm_read_folder.html | 4 ++-- reference/null_as_zero.html | 2 +- reference/order_post_eti.html | 2 +- reference/overall_uniform.html | 2 +- reference/parse_nplcm_reg.html | 2 +- reference/pathogen_category_perch.html | 2 +- reference/pathogen_category_simulation.html | 2 +- reference/plot.nplcm.html | 2 +- reference/plot_BrS_panel.html | 2 +- reference/plot_SS_panel.html | 2 +- reference/plot_case_study.html | 2 +- reference/plot_check_common_pattern-1.png | Bin 161464 -> 158854 bytes reference/plot_check_common_pattern.html | 4 ++-- reference/plot_check_pairwise_SLORD-1.png | Bin 81746 -> 80553 bytes reference/plot_check_pairwise_SLORD.html | 6 +++--- reference/plot_etiology_regression.html | 2 +- reference/plot_etiology_strat.html | 2 +- reference/plot_leftmost.html | 2 +- reference/plot_logORmat.html | 2 +- reference/plot_panels.html | 2 +- reference/plot_pie_panel.html | 2 +- reference/plot_subwt_regression.html | 2 +- reference/print.nplcm.html | 2 +- reference/print.summary.nplcm.no_reg.html | 2 +- reference/print.summary.nplcm.reg_nest.html | 2 +- .../print.summary.nplcm.reg_nest_strat.html | 2 +- reference/print.summary.nplcm.reg_nonest.html | 2 +- .../print.summary.nplcm.reg_nonest_strat.html | 2 +- reference/read_meas_object.html | 2 +- reference/rvbern.html | 2 +- reference/s_date_Eti.html | 2 +- reference/s_date_FPR.html | 2 +- reference/set_prior_tpr_BrS_NoNest.html | 2 +- reference/set_prior_tpr_SS.html | 2 +- reference/set_strat.html | 2 +- reference/show_dep.html | 2 +- reference/show_individual.html | 2 +- reference/simulate_brs.html | 2 +- reference/simulate_latent.html | 2 +- reference/simulate_nplcm.html | 2 +- reference/simulate_ss.html | 2 +- reference/softmax.html | 2 +- reference/subset_data_nplcm_by_index.html | 2 +- reference/summarize_BrS.html | 2 +- reference/summarize_SS.html | 2 +- reference/summary.nplcm.html | 2 +- reference/sym_diff_month.html | 2 +- reference/symb2I.html | 2 +- reference/tsb.html | 2 +- reference/unfactor.html | 2 +- reference/unique_cause.html | 2 +- reference/unique_month.html | 2 +- reference/visualize_case_control_matrix.html | 2 +- reference/visualize_season.html | 2 +- reference/write.model.html | 2 +- reference/write_model_NoReg.html | 2 +- reference/write_model_Reg_Nest.html | 2 +- reference/write_model_Reg_NoNest.html | 2 +- ...e_model_Reg_discrete_predictor_NoNest.html | 2 +- search.json | 2 +- 167 files changed, 176 insertions(+), 172 deletions(-) diff --git a/404.html b/404.html index fc1c874..a93eb81 100644 --- a/404.html +++ b/404.html @@ -24,7 +24,7 @@ baker - 1.0.2.9000 + 1.0.3