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all_sum_SHAP.R
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all_sum_SHAP.R
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source("sum_SHAP_by_HiC_v3.R")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Astro")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Endo")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L2/3 IT")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L5 ET")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L5 IT")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L5/6 NP")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L6 CT")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L6 IT")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","L6b")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Lamp5")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Micro-PVM")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Oligo")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","OPC")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Pvalb")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Sncg")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Sst")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","Vip")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final","VLMC")
sum_SHAP_by_HiC_v3("Mouse_atac_dif_selected.csv",c("Mouse_atac_10000_deep_DR_meanshap.csv","Human_atac_10000_deep_DR_meanshap.csv","Macaque_atac_10000_deep_DR_meanshap.csv","Marmoset_atac_10000_deep_DR_meanshap.csv"),"cons_atac_list.csv",c("rna_1000_deep_DR_meanshap.csv","mCG_1000_deep_DR_meanshap.csv","mCH_1000_deep_DR_meanshap.csv"),"inLoop/","final2","Sst Chodl")