Python tool for relative mutation rate of different genes across viral strains.
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Updated
May 11, 2024 - Python
Python tool for relative mutation rate of different genes across viral strains.
Data portal and API for Center for Viral Systems Biology (CViSB) data
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
Repository for analyses of HHV-6 reactivation using genomics
A bioinformatics tool for designing primers and generating consensus sequences in viral genome analysis. It supports processing multiple aligned genomic sequences, optimizing primers, and visualizing genome annotations.
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
Viral genome assemble and characterisation
VIral GEnome ASsembly pipelines for WGS
RecombinHunt (alias for the software contained in this repository) is a Python library implementing a data-driven novel method for identifying contributing lineages and breakpoints in recombinant viral sequences.
Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
Human RNA virus genotyping
EDA of virus orthologous groups (VOGs) from VOGDB and eggNOG
TopONE is a project that studies recombination events using topological data analysis. This was made in the PGC-BTIP 2024 internship by Alfonso Miguel Cruz and Claire Angelie Gabisay, and mentored by C.J. Palpal-latoc.
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