habenulaPilot project code repository
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Updated
Jul 11, 2024 - HTML
habenulaPilot project code repository
A tool for single cell genomics data processing and analysis
A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
snRNA_seq portion of the spatialDLPFC project
A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Spatial alignment of single cell transcriptomic data.
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