protein-dynamics
Here are 18 public repositories matching this topic...
A julia library for mode coupling analysis of protein simulations
-
Updated
May 26, 2015 - Julia
Coarse-grained sticker spacer model of proteins
-
Updated
Feb 3, 2022 - C++
Kern Lab website
-
Updated
Oct 11, 2024 - HTML
A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission
-
Updated
Sep 16, 2024 - MATLAB
sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.
-
Updated
Mar 11, 2020 - Python
Development of Python library for standardized generation and evaluation/characterization of protein structural ensembles.
-
Updated
Jul 11, 2022 - Python
Program to calculate the most probable path between two equilibrium states of a biomolecule
-
Updated
Aug 26, 2020 - Python
Predicting allosteric and active site residues in proteins with machine learning and protein sequence, structure and dynamics features
-
Updated
Aug 5, 2021 - MATLAB
Code for generating movies of the most relevant movement modes of proteins from their PDB files, using rigidity clustering analysis
-
Updated
Nov 27, 2022 - C++
PORCUPINEplot is a script developed to automate the generation of porcupine plots of PCA analysis.
-
Updated
Jan 9, 2023 - Python
C++ package that provides tools for correcting structural predictions of proteins (eg. from X-Ray Crystallography or AlphaFold) using X-ray small-angle scattering (SAXS) in solution
-
Updated
Sep 20, 2024 - C++
Topological data analytic approach for discovering biophysical signatures in protein dynamics
-
Updated
Mar 14, 2024 - Python
Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).
-
Updated
Sep 11, 2024 - Jupyter Notebook
A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
-
Updated
Jan 2, 2019 - Python
Prediction of protein thermodynamic stability changes upon mutations through a Gaussian Network Model simulating protein unfolding behavior
-
Updated
Feb 6, 2023 - Python
An interactive visual simulator for distance-based protein folding
-
Updated
Mar 1, 2021 - Java
Derive ΔG for single residues from HDX-MS data
-
Updated
Oct 14, 2024 - Jupyter Notebook
Improve this page
Add a description, image, and links to the protein-dynamics topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the protein-dynamics topic, visit your repo's landing page and select "manage topics."