Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
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Updated
Oct 14, 2024 - Visual Basic .NET
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
QC systems for metabolomics studies
Website with utilities for organic chemists.
Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching
Load and analyze MS-DIAL alignment files in R for analysis of mass spectrometry data.
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
A Heuristic Strategy for Metabolomics Analysis based on multiple chromatographic gradients to enhance metabolite coverage in untargeted metabolomics analysis.
R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
PepFoot: a user friendly GUI for protein footprinting analysis
R/Bioconductor package - STRUCT: STatistics in R Using Class Templates
R/Bioconductor package - Peak Matrix Processing and signal batch correction for metabolomics data sets
CRISP-DIA is a software for liquid chromatography-tandem mass spectrometry (LC-MS/MS) based proteomics data processing, which enables accurate and reliable quantification for data-independent acquisition (DIA) proteomics.
R script and Shiny app to perform stratified randomisation
A tool for mass spectrometry data analysis.
BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463
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