Mathematical Modeling of Infectious Disease Dynamics
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Updated
Oct 14, 2024 - R
Mathematical Modeling of Infectious Disease Dynamics
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
Infectious Disease Sequencing Platform
Mycobacterial pipeline
Janani Ravi's Research Group
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
CRAN Task View: Epidemiology
Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance
The website showcases Arun Boddapati's professional portfolio, emphasizing his expertise as a bioinformatics scientist and machine learning expert.
Create Contact Matrices from Population Data
R Package for individual based epidemiological models
This package provides the data used in the Health Metrics and the Spread of Infectious Diseases with R book
NACef (Community-Acquired Pneumonia, Endotypes and Phenotypes) is a single-center dataset that includes clinical information from 768 patients diagnosed with Community-Acquired Pneumonia (CAP) at Clinica Universidad de La Sabana, Colombia.
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
An R package and web application for estimating the basic reproduction number (R0) of infectious diseases.
Package-based approach to Modern Techniques in Modelling: deprecated as Too Modern
The mathematical modeling of the optimal strategy for influenza vaccination was studied using a transmission dynamics model that considered population movement, province, and age group
this is a repository to design a deep learning model to detect leishmaniasis in microscopic images
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