Structural Variants in cell-free tumor DNA
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Updated
May 21, 2018
Structural Variants in cell-free tumor DNA
Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.
Hunting for CMV and HHV-6 in cfDNA sequence
R package to work with ctDNA sequencing data
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
A code to simulate the events of cell-free protein expression
cell-free ChIP-seq pipeline
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
Copy number calling and variant classification using targeted short read sequencing
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
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