environment.yml

name: spnet
channels:
  - pytorch
  - anaconda
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - appdirs=1.4.3=py36h28b3542_0
  - aria2=1.34.0=0
  - asn1crypto=0.24.0=py36_0
  - astroid=2.0.4=py36_0
  - attrs=18.2.0=py36h28b3542_0
  - automat=0.7.0=py36_0
  - backcall=0.1.0=py_0
  - blas=1.0=mkl
  - bleach=2.1.4=py36_0
  - boost=1.67.0=py36_4
  - boto=2.49.0=py36_0
  - boto3=1.8.2=py36_0
  - bzip2=1.0.6=h14c3975_5
  - c-ares=1.15.0=h7b6447c_1
  - ca-certificates=2019.1.23=0
  - cachetools=2.1.0=py_0
  - cairo=1.14.12=h8948797_3
  - certifi=2019.3.9=py36_0
  - click=7.0=py_0
  - cloudpickle=0.8.0=py_0
  - cmake=3.12.2=h52cb24c_0
  - constantly=15.1.0=py36h28b3542_0
  - cryptography=2.4.2=py36h1ba5d50_0
  - cudatoolkit=9.0=h13b8566_0
  - cudnn=7.3.1=cuda9.0_0
  - cupy=4.1.0=py36h0ee51e5_0
  - cython=0.28.5=py36hf484d3e_0
  - dask-core=1.1.4=py_0
  - dbus=1.13.6=h746ee38_0
  - decorator=4.4.0=py_0
  - defusedxml=0.5.0=py36_1
  - dill=0.2.8.2=py36_0
  - docutils=0.14=py36_0
  - entrypoints=0.2.3=py36_2
  - expat=2.2.6=he6710b0_0
  - fastrlock=0.3=py36hf484d3e_0
  - ffmpeg=4.0=hcdf2ecd_0
  - fontconfig=2.13.0=h9420a91_0
  - freeglut=3.0.0=hf484d3e_5
  - freetype=2.9.1=h8a8886c_1
  - gensim=3.4.0=py36h14c3975_0
  - gettext=0.19.8.1=hd7bead4_3
  - ghostscript=9.22=hf484d3e_1001
  - giflib=5.1.4=h14c3975_1
  - glib=2.56.2=hd408876_0
  - gmp=6.1.2=h6c8ec71_1
  - gnutls=3.6.5=hd3a4fd2_1002
  - google-auth=1.5.1=py_0
  - google-cloud-sdk=216.0.0=py36_0
  - google-resumable-media=0.3.1=py_0
  - graphite2=1.3.13=h23475e2_0
  - gst-plugins-base=1.14.0=hbbd80ab_1
  - gstreamer=1.14.0=hb453b48_1
  - h5py=2.9.0=py36h7918eee_0
  - harfbuzz=1.8.8=hffaf4a1_0
  - hdf5=1.10.4=hb1b8bf9_0
  - html5lib=1.0.1=py36_0
  - hyperlink=18.0.0=py36_0
  - icu=58.2=h9c2bf20_1
  - imageio=2.5.0=py36_0
  - incremental=17.5.0=py36_0
  - intel-openmp=2019.1=144
  - ipdb=0.11=py_1
  - ipykernel=5.1.0=py36h39e3cac_0
  - ipython=7.4.0=py36h39e3cac_0
  - ipython_genutils=0.2.0=py_1
  - ipywidgets=7.4.2=py36_0
  - isort=4.3.4=py36_0
  - jasper=2.0.14=h07fcdf6_1
  - jedi=0.12.1=py36_0
  - jinja2=2.10=py36_0
  - jmespath=0.9.3=py36_0
  - jpeg=9b=h024ee3a_2
  - jsonschema=2.6.0=py36_0
  - jupyter=1.0.0=py36_7
  - jupyter_client=5.2.4=py36_0
  - jupyter_console=6.0.0=py36_0
  - jupyter_core=4.4.0=py36_0
  - kiwisolver=1.0.1=py36h6bb024c_1002
  - krb5=1.16.1=h173b8e3_7
  - lame=3.100=h14c3975_1001
  - lazy-object-proxy=1.3.1=py36h14c3975_2
  - libboost=1.67.0=h46d08c1_4
  - libcurl=7.64.0=h20c2e04_2
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hd88cf55_4
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=8.2.0=hdf63c60_1
  - libgfortran=3.0.0=1
  - libgfortran-ng=7.3.0=hdf63c60_0
  - libglu=9.0.0=hf484d3e_1
  - libiconv=1.15=h63c8f33_5
  - libopenblas=0.3.3=h5a2b251_3
  - libopus=1.3=h7b6447c_0
  - libpng=1.6.36=hbc83047_0
  - libprotobuf=3.6.1=hd408876_0
  - libsodium=1.0.16=h1bed415_0
  - libssh2=1.8.0=h1ba5d50_4
  - libstdcxx-ng=8.2.0=hdf63c60_1
  - libtiff=4.0.10=h2733197_2
  - libuuid=1.0.3=h1bed415_2
  - libvpx=1.7.0=h439df22_0
  - libwebp=1.0.1=h8e7db2f_0
  - libxcb=1.13=h1bed415_1
  - libxml2=2.9.9=he19cac6_0
  - mako=1.0.7=py_1
  - markdown=2.6.11=py_0
  - markupsafe=1.1.1=py36h14c3975_0
  - matplotlib-base=3.0.3=py36h167e16e_0
  - mccabe=0.6.1=py36_1
  - mistune=0.8.3=py36h14c3975_1
  - mkl=2018.0.3=1
  - mkl_fft=1.0.10=py36_0
  - mkl_random=1.0.2=py36_0
  - nbconvert=5.4.1=py36_3
  - nbformat=4.4.0=py36_0
  - nccl=1.3.5=cuda9.0_0
  - ncurses=6.1=he6710b0_1
  - nettle=3.4.1=h1bed415_1002
  - networkx=2.2=py_1
  - ninja=1.9.0=h6bb024c_0
  - notebook=5.7.8=py36_0
  - numpy=1.15.4=py36h1d66e8a_0
  - numpy-base=1.15.4=py36h81de0dd_0
  - olefile=0.46=py_0
  - openblas=0.3.3=h9ac9557_1001
  - openh264=1.8.0=hdbcaa40_1000
  - openssl=1.1.1b=h7b6447c_1
  - pandas=0.23.4=py36h04863e7_0
  - pandoc=2.2.3.2=0
  - pandocfilters=1.4.2=py36_1
  - parso=0.3.4=py_0
  - pcre=8.43=he6710b0_0
  - pexpect=4.6.0=py36_0
  - pickleshare=0.7.4=py36_0
  - pillow=5.4.1=py36h34e0f95_0
  - pip=19.0.3=py36_0
  - pixman=0.38.0=h7b6447c_0
  - prometheus_client=0.3.1=py36h28b3542_0
  - prompt_toolkit=2.0.9=py36_0
  - pthread-stubs=0.3=h0ce48e5_1
  - ptyprocess=0.6.0=py36_0
  - py-boost=1.67.0=py36h04863e7_4
  - pyasn1=0.4.4=py36h28b3542_0
  - pyasn1-modules=0.2.2=py36_0
  - pycparser=2.19=py36_1
  - pydensecrf=1.0rc3=py36hf8a1672_1
  - pygments=2.3.1=py_0
  - pylint=2.1.1=py36_0
  - pyopenssl=17.4.0=py36ha353062_0
  - pyqt=5.9.2=py36h05f1152_2
  - pysocks=1.6.8=py36_0
  - python=3.6.7=h381d211_1004
  - pytorch=0.4.1=py36_py35_py27__9.0.176_7.1.2_2
  - pywavelets=1.0.2=py36h3010b51_0
  - pyyaml=5.1=py36h14c3975_0
  - qt=5.9.7=h5867ecd_1
  - qtconsole=4.4.3=py36_0
  - readline=7.0=h7b6447c_5
  - requests=2.19.1=py36_0
  - rhash=1.3.8=h1ba5d50_0
  - rsa=3.4.2=py_1
  - s3transfer=0.1.13=py36_0
  - scikit-image=0.14.2=py36hf484d3e_1
  - scikit-learn=0.19.1=py36hedc7406_0
  - scipy=1.1.0=py36hfa4b5c9_1
  - send2trash=1.5.0=py36_0
  - service_identity=17.0.0=py36h28b3542_0
  - simplegeneric=0.8.1=py_1
  - sip=4.19.8=py36hf484d3e_1000
  - six=1.12.0=py36_1000
  - smart_open=1.6.0=py36_0
  - sqlite=3.27.2=h7b6447c_0
  - terminado=0.8.1=py36_1
  - testpath=0.3.1=py36_0
  - tk=8.6.9=h84994c4_1000
  - torchvision=0.2.1=py_2
  - tornado=6.0.2=py36h7b6447c_0
  - tqdm=4.31.1=py_0
  - traitlets=4.3.2=py36_0
  - twisted=18.7.0=py36h14c3975_1
  - typed-ast=1.1.0=py36h14c3975_0
  - wcwidth=0.1.7=py_1
  - webencodings=0.5.1=py36_1
  - wheel=0.33.1=py36_0
  - widgetsnbextension=3.4.2=py36_0
  - wrapt=1.10.11=py36h14c3975_2
  - x264=1!152.20180717=h14c3975_1001
  - xorg-libxau=1.0.8=h470a237_6
  - xorg-libxdmcp=1.1.2=h470a237_7
  - xz=5.2.4=h14c3975_4
  - yaml=0.1.7=had09818_2
  - zeromq=4.3.1=he6710b0_3
  - zlib=1.2.11=h7b6447c_3
  - zope=1.0=py36_1
  - zope.interface=4.5.0=py36h14c3975_0
  - zstd=1.3.7=h0b5b093_0
  - pip:
    - absl-py==0.4.1
    - addict==2.2.0
    - alabaster==0.7.12
    - allennlp==0.7.2
    - astor==0.7.1
    - atomicwrites==1.2.1
    - aws-xray-sdk==0.95
    - awscli==1.16.72
    - babel==2.6.0
    - botocore==1.12.62
    - cffi==1.11.2
    - chardet==3.0.4
    - colorama==0.3.9
    - conllu==0.11
    - cookies==2.2.1
    - cycler==0.10.0
    - cymem==2.0.2
    - cysignals==1.7.2
    - cytoolz==0.9.0.1
    - docker==3.6.0
    - docker-pycreds==0.4.0
    - ecdsa==0.13
    - editdistance==0.5.2
    - flaky==3.4.0
    - flask==1.0.2
    - flask-cors==3.0.6
    - ftfy==5.5.0
    - future==0.16.0
    - gast==0.2.0
    - gevent==1.3.6
    - greenlet==0.4.15
    - grpcio==1.14.2
    - idna==2.7
    - imagesize==1.1.0
    - itsdangerous==1.1.0
    - jsondiff==1.1.1
    - jsonnet==0.10.0
    - jsonpickle==1.0
    - line-profiler==2.1.2
    - matplotlib==2.2.3
    - mmdnn==0.2.3
    - mock==2.0.0
    - more-itertools==4.3.0
    - moto==1.3.4
    - msgpack==0.5.6
    - msgpack-numpy==0.4.3.2
    - murmurhash==1.0.1
    - nltk==3.4
    - numpydoc==0.8.0
    - opencv-python==3.4.1.15
    - overrides==1.9
    - packaging==18.0
    - parsimonious==0.8.0
    - pbr==5.1.1
    - plac==0.9.6
    - pluggy==0.8.0
    - preshed==2.0.1
    - prompt-toolkit==1.0.15
    - protobuf==3.6.1
    - py==1.7.0
    - pyaml==18.11.0
    - pycocotools==2.0
    - pycryptodome==3.7.2
    - pyfasttext==0.4.5
    - pyparsing==2.2.0
    - pytest==4.0.1
    - python-dateutil==2.7.3
    - python-jose==2.0.2
    - pytorch-pretrained-bert==0.1.2
    - pytz==2018.5
    - pyzmq==17.1.2
    - regex==2018.1.10
    - responses==0.10.4
    - setuptools==39.1.0
    - singledispatch==3.4.0.3
    - snowballstemmer==1.2.1
    - spacy==2.0.18
    - sphinx==1.8.2
    - sphinxcontrib-websupport==1.1.0
    - sqlparse==0.2.4
    - tensorboard==1.9.0
    - tensorboardx==1.2
    - tensorflow==1.9.0
    - termcolor==1.1.0
    - thinc==6.12.1
    - toolz==0.9.0
    - torchfile==0.1.0
    - torchnet==0.0.2
    - ujson==1.35
    - unidecode==1.0.23
    - urllib3==1.23
    - uuid==1.30
    - visdom==0.1.8.5
    - websocket-client==0.51.0
    - werkzeug==0.14.1
    - xmltodict==0.11.0