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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Snipe SRA Exploration Dashboard</title>
<script src="https://cdnjs.cloudflare.com/ajax/libs/PapaParse/5.3.0/papaparse.min.js"></script>
<script src="https://cdn.plot.ly/plotly-2.35.2.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/jspdf/2.5.1/jspdf.umd.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.6.0/css/all.min.css">
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.5.2/css/bootstrap.min.css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/noUiSlider/14.6.3/nouislider.min.css">
<script src="https://cdnjs.cloudflare.com/ajax/libs/noUiSlider/14.6.3/nouislider.min.js"></script>
<!-- Driver.js CSS and JS -->
<script src="https://cdn.jsdelivr.net/npm/driver.js@1.0.1/dist/driver.js.iife.js"></script>
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/driver.js@1.0.1/dist/driver.css" />
<style>
body {
font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;
margin: 0;
padding: 0;
background: linear-gradient(135deg, #f5f7fa 0%, #c3cfe2 100%);
min-height: 100vh;
}
.container {
background-color: white;
padding: 2rem;
border-radius: 15px;
box-shadow: 0 10px 30px rgba(0, 0, 0, 0.1);
width: 90%;
max-width: 1200px;
margin: 2rem auto;
}
h1,
h2 {
color: #2c3e50;
text-align: center;
margin-bottom: 2rem;
font-size: 2.5rem;
text-transform: uppercase;
letter-spacing: 2px;
}
h2 {
font-size: 1.8rem;
margin-top: 2rem;
}
select[multiple] {
height: auto;
}
/* Adjust the plot container to accommodate the controls */
.plot-container {
margin-top: 1rem;
margin-bottom: 3rem;
}
/* END: CHECKBOXES in SRA Assay type */
label {
font-weight: bold;
margin-bottom: 0.5rem;
color: #34495e;
}
select {
padding: 10px;
font-size: 16px;
border-radius: 8px;
border: 1px solid #bdc3c7;
background-color: #ecf0f1;
transition: all 0.3s ease;
}
select:focus {
outline: none;
box-shadow: 0 0 0 2px #3498db;
}
.plot {
width: 100%;
height: 600px;
border-radius: 8px;
overflow: hidden;
box-shadow: 0 4px 6px rgba(0, 0, 0, 0.1);
margin-bottom: 2rem;
}
.table-container {
width: 100%;
overflow-x: auto;
}
table {
width: 100%;
border-collapse: collapse;
margin-top: 2rem;
}
th,
td {
border: 1px solid #ddd;
padding: 8px;
text-align: left;
}
th {
background-color: #f2f2f2;
font-weight: bold;
}
tr:nth-child(even) {
background-color: #f9f9f9;
}
#plots-container {
margin-bottom: 2rem;
}
#data-selection-section {
margin-top: 2rem;
padding-top: 2rem;
border-top: 2px solid #3498db;
}
#table-container {
max-height: 400px;
overflow-y: auto;
margin-top: 1rem;
}
.additional-inputs {
margin-top: 1.5rem;
padding: 1rem;
background-color: #f9fbfd;
border: 1px solid #dce1e6;
border-radius: 8px;
}
.title-input,
.notes-textarea {
width: 100%;
padding: 12px;
font-size: 14px;
border: 1px solid #bdc3c7;
border-radius: 5px;
transition: all 0.3s ease;
font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;
}
.title-input:focus,
.notes-textarea:focus {
outline: none;
border-color: #3498db;
box-shadow: 0 0 5px rgba(52, 152, 219, 0.5);
}
.notes-textarea {
min-height: 100px;
resize: vertical;
}
.notes-container label {
display: block;
margin-bottom: 0.5rem;
font-weight: bold;
}
/* Updated styling for the search bar */
.search-container {
display: flex;
align-items: center;
margin-bottom: 1rem;
}
.search-container input[type="text"] {
flex: 1;
padding: 10px;
font-size: 16px;
border: 1px solid #bdc3c7;
border-radius: 5px;
margin-right: 10px;
}
.search-container button {
/* Existing styles */
padding: 10px 20px;
font-size: 16px;
color: white;
background-color: #3498db;
border: none;
border-radius: 5px;
cursor: pointer;
/* Add pulse animation */
animation: pulse 2s infinite;
}
.search-container button:hover {
background-color: #2980b9;
}
#search-input {
flex: 1;
padding: 10px;
font-size: 16px;
border: 1px solid #bdc3c7;
border-radius: 5px;
margin-right: 10px;
}
#search-button {
padding: 10px 20px;
font-size: 16px;
color: white;
background-color: #0beac5;
border: none;
border-radius: 5px;
cursor: pointer;
}
#search-button:hover {
background-color: #2980b9;
}
.export-buttons {
display: flex;
justify-content: space-between;
margin-top: 1rem;
}
/* Enhanced button styles */
.button {
padding: 10px 20px;
font-size: 14px;
color: white;
background-color: #3498db;
border: none;
border-radius: 5px;
cursor: pointer;
transition: all 0.3s ease;
margin-right: 10px;
display: inline-flex;
align-items: center;
justify-content: center;
text-transform: uppercase;
font-weight: 600;
letter-spacing: 0.5px;
box-shadow: 0 2px 4px rgba(0, 0, 0, 0.1);
}
.button:hover {
background-color: #2980b9;
box-shadow: 0 4px 6px rgba(0, 0, 0, 0.15);
}
.button::before {
font-family: "Font Awesome 5 Free";
font-weight: 900;
margin-right: 8px;
}
/* START: FLOATING BUTTON*/
/* Floating Buttons Container */
.floating-buttons {
position: fixed;
/* Floating Button Style */
.floating-button {
background-color: #e74c3c;
/* Default color, overridden per button */
color: white;
border: none;
padding: 10px;
border-radius: 50%;
/* Make it circular */
cursor: pointer;
display: flex;
align-items: center;
justify-content: flex-start;
transition: width 0.3s ease, border-radius 0.3s ease;
width: 50px;
/* Initial width to fit the icon */
height: 50px;
/* Fixed height */
overflow: hidden;
/* Hide text initially */
position: relative;
}
.floating-button i {
font-size: 24px;
/* Icon size */
/* margin-left: 10px; */
margin: 0;
/* Center the icon */
}
.floating-button span {
opacity: 0;
/* Hide text initially */
margin-left: 10px;
transition: opacity 0.3s ease;
white-space: nowrap;
}
.floating-button:hover {
width: 200px;
/* Expand width on hover */
border-radius: 25px;
/* Rounded rectangle when expanded */
}
.floating-button:hover span {
opacity: 1;
/* Show text on hover */
}
/* Individual Button Styles */
#clear-selections {
background-color: #e74c3c;
}
#clear-selections:hover {
background-color: #c0392b;
}
#export-table {
background-color: #f39c12;
}
#export-table:hover {
background-color: #d35400;
}
#export-pdf {
background: linear-gradient(-45deg, #405de6, #5851db, #833ab4, #c13584);
background-size: 400% 400%;
animation: gradientAnimation 15s ease infinite;
}
#export-pdf:hover {
background-size: 200% 200%;
}
#scroll-to-table {
background-color: #9b59b6;
}
#scroll-to-table:hover {
background-color: #8e44ad;
}
right: 20px;
top: 50%;
transform: translateY(-50%);
display: flex;
flex-direction: column;
gap: 10px;
z-index: 1000;
align-items: flex-end;
}
/* Floating Button Style */
.floating-button {
background-color: #e74c3c;
/* Default color, overridden per button */
color: white;
border: none;
padding: 10px;
border-radius: 50%;
/* Make it circular */
cursor: pointer;
display: flex;
align-items: center;
justify-content: flex-start;
transition: width 0.3s ease, border-radius 0.3s ease;
width: 50px;
/* Initial width to fit the icon */
height: 50px;
/* Fixed height */
overflow: hidden;
/* Hide text initially */
position: relative;
}
.floating-button i {
font-size: 20px;
/* Icon size */
margin-left: 10px;
}
.floating-button span {
opacity: 0;
/* Hide text initially */
margin-left: 10px;
transition: opacity 0.3s ease;
white-space: nowrap;
}
.floating-button:hover {
width: 200px;
/* Expand width on hover */
border-radius: 25px;
/* Rounded rectangle when expanded */
}
.floating-button:hover span {
opacity: 1;
/* Show text on hover */
}
/* Individual Button Styles */
#clear-selections {
background-color: #e74c3c;
}
#clear-selections:hover {
background-color: #c0392b;
}
#export-table {
background-color: #f39c12;
}
#export-table:hover {
background-color: #d35400;
}
#export-pdf {
background: linear-gradient(-45deg, #405de6, #5851db, #833ab4, #c13584);
background-size: 400% 400%;
animation: gradientAnimation 15s ease infinite;
}
#export-pdf:hover {
background-size: 200% 200%;
}
#scroll-to-table {
background-color: #9b59b6;
}
#scroll-to-table:hover {
background-color: #8e44ad;
}
#help-button {
background-color: #3498db;
}
/* Gradient Animation */
@keyframes gradientAnimation {
0% {
background-position: 0% 50%;
}
50% {
background-position: 100% 50%;
}
100% {
background-position: 0% 50%;
}
}
/* Responsive Adjustments */
@media (max-width: 768px) {
.floating-buttons {
right: 10px;
}
.floating-button:hover {
width: 160px;
/* Reduce expansion width */
}
}
@media (max-width: 480px) {
.floating-buttons {
right: 5px;
}
.floating-button:hover {
width: 140px;
/* Further reduce expansion */
}
}
@keyframes gradientAnimation {
0% {
background-position: 0% 50%;
}
50% {
background-position: 100% 50%;
}
100% {
background-position: 0% 50%;
}
}
/* DRIVERJS */
.driver-popover.driverjs-theme {
background-color: #fde047;
color: #000;
}
.driver-popover.driverjs-theme .driver-popover-title {
font-size: 20px;
}
.driver-popover.driverjs-theme .driver-popover-title,
.driver-popover.driverjs-theme .driver-popover-description,
.driver-popover.driverjs-theme .driver-popover-progress-text {
color: #000;
}
.driver-popover.driverjs-theme button {
flex: 1;
text-align: center;
background-color: #000;
color: #ffffff;
border: 2px solid #000;
text-shadow: none;
font-size: 14px;
padding: 5px 8px;
border-radius: 6px;
}
.driver-popover.driverjs-theme button:hover {
background-color: #000;
color: #ffffff;
}
.driver-popover.driverjs-theme .driver-popover-navigation-btns {
justify-content: space-between;
gap: 3px;
}
/* Hide the close button */
.driver-popover.driverjs-theme .driver-popover-close-btn {
display: none;
}
.driver-popover.driverjs-theme .driver-popover-arrow-side-left.driver-popover-arrow {
border-left-color: #fde047;
}
.driver-popover.driverjs-theme .driver-popover-arrow-side-right.driver-popover-arrow {
border-right-color: #fde047;
}
.driver-popover.driverjs-theme .driver-popover-arrow-side-top.driver-popover-arrow {
border-top-color: #fde047;
}
.driver-popover.driverjs-theme .driver-popover-arrow-side-bottom.driver-popover-arrow {
border-bottom-color: #fde047;
}
/* END: DRIVERJS */
/* START: HELP AREA */
/* Modal overlay */
.modal {
display: none;
/* Hidden by default */
position: fixed;
z-index: 1001;
left: 0;
top: 0;
width: 100%;
height: 100%;
backdrop-filter: blur(5px);
background-color: rgba(0, 0, 0, 0.5);
align-items: center;
justify-content: center;
overflow: hidden;
flex-direction: column;
/* Ensure column layout for centering */
}
/* Modal content */
.modal-content {
background: rgba(255, 255, 255, 0.95);
padding: 30px;
border-radius: 15px;
width: 80%;
max-width: 800px;
font-family: 'Segoe UI', Tahoma, Geneva, Verdana, sans-serif;
box-shadow: 0 15px 30px rgba(0, 0, 0, 0.2);
position: relative;
text-align: left;
/* Center content */
}
/* Close button */
.close-button {
color: #aaa;
position: absolute;
top: 20px;
right: 25px;
font-size: 30px;
font-weight: bold;
cursor: pointer;
transition: color 0.3s ease;
}
.close-button:hover,
.close-button:focus {
color: #333;
text-decoration: none;
cursor: pointer;
}
/* Modal header */
.modal-content h2 {
margin-top: 0;
color: #2c3e50;
font-size: 2rem;
text-transform: uppercase;
letter-spacing: 1px;
}
/* Styling for the help button */
/* Styling for the help button */
.help-button {
background-color: #426b5f;
border: none;
border-radius: 25px;
cursor: pointer;
color: white;
font-size: 18px;
font-weight: bold;
padding: 10px 20px;
transition: background-color 0.3s ease, transform 0.2s ease;
box-shadow: 0 4px 8px rgba(0, 0, 0, 0.2);
display: flex;
align-items: center;
justify-content: center;
/* Center the text and icon inside the button */
height: 50px;
/* Set a fixed height for consistent appearance */
}
.help-button i {
font-size: 24px;
margin-right: 8px;
}
.help-button:hover {
background-color: #2980b9;
transform: scale(1.05);
box-shadow: 0 6px 12px rgba(0, 0, 0, 0.3);
}
.help-button:focus {
outline: none;
box-shadow: 0 0 5px 2px rgba(52, 152, 219, 0.5);
}
.control-group .help-button {
margin-left: 20px;
/* Space it out from the rest of the controls */
width: auto;
/* Auto width for better flexibility */
height: auto;
}
/* Column definitions inside modal */
#modal-column-definitions {
margin-top: 2rem;
max-height: 70vh;
overflow-y: auto;
}
/* Styles for the definitions list */
#modal-column-definitions dl {
margin: 0;
}
#modal-column-definitions dt {
font-weight: bold;
color: #34495e;
font-size: 1.1rem;
margin-top: 1rem;
}
#modal-column-definitions dd {
margin: 0 0 1rem 0;
color: #2c3e50;
font-size: 1rem;
line-height: 1.5;
}
/* Scrollbar styling (for WebKit browsers) */
#modal-column-definitions::-webkit-scrollbar {
width: 8px;
}
#modal-column-definitions::-webkit-scrollbar-track {
background: #f1f1f1;
}
#modal-column-definitions::-webkit-scrollbar-thumb {
background: #888;
border-radius: 4px;
}
#modal-column-definitions::-webkit-scrollbar-thumb:hover {
background: #555;
}
/* END: HELP AREA */
/* Styles for Species Selection */
.species-selection {
display: flex;
flex-wrap: wrap;
align-items: flex-start;
background-color: #f8f9fa;
padding: 1rem;
border-radius: 8px;
box-shadow: 0 2px 4px rgba(0, 0, 0, 0.1);
margin-bottom: 2rem;
}
.species-selection .control-group {
flex: 1;
margin-right: 1rem;
min-width: 150px;
display: flex;
flex-direction: column;
}
.species-selection .control-group:last-child {
margin-right: 0;
}
.species-selection .control-group label {
margin-bottom: 0.5rem;
font-weight: 600;
color: #495057;
font-size: 0.9rem;
}
.species-selection .control-group select,
.species-selection button {
width: 100%;
padding: 0.5rem;
border: 1px solid #ced4da;
border-radius: 4px;
background-color: #fff;
font-size: 1rem;
color: #495057;
transition: border-color 0.15s ease-in-out, box-shadow 0.15s ease-in-out;
}
.species-selection button {
margin-top: 1rem;
background-color: #3498db;
color: white;
cursor: pointer;
font-weight: bold;
text-transform: uppercase;
letter-spacing: 1px;
}
.species-selection button:disabled {
background-color: #bdc3c7;
cursor: not-allowed;
}
.species-selection select:focus,
.species-selection button:focus {
border-color: #80bdff;
outline: 0;
box-shadow: 0 0 0 0.2rem rgba(0, 123, 255, 0.25);
}
/* Gentle pulsing animation for Load Data button */
@keyframes gentlePulse {
0% {
transform: scale(1);
box-shadow: 0 0 0 0 rgba(46, 204, 113, 0.4);
}
50% {
transform: scale(1.05);
box-shadow: 0 0 15px 5px rgba(46, 204, 113, 0.3);
}
100% {
transform: scale(1);
box-shadow: 0 0 0 0 rgba(46, 204, 113, 0);
}
}
#load-data-button:not(:disabled) {
animation: gentlePulse 2.5s infinite;
transition: background-color 0.3s ease;
background-color: #2ecc71;
/* Professional green color */
padding: 10px 20px;
border: none;
border-radius: 5px;
cursor: pointer;
/*move the button a bit to down*/
margin-top: 25px;
}
#load-data-button:hover {
background-color: #27ae60;
/* Darken the color slightly on hover */
}
/* if disabled, also margin-top: 25px; */
#load-data-button:disabled {
background-color: #bdc3c7;
cursor: not-allowed;
margin-top: 25px;
}
/* Styles for Import/Export Floating Buttons */
#import-session,
#export-session,
#export-session-url {
background-color: #16a085;
}
#import-session:hover,
#export-session:hover,
#export-session-url:hover {
background-color: #138d75;
}
#add-view-container {
margin: 2rem 0;
text-align: center;
width: 100%;
position: relative;
}
.add-view-button {
display: inline-flex;
align-items: center;
justify-content: center;
background-color: transparent;
color: #3442db;
font-size: 1.2rem;
font-weight: bold;
padding: 10px 20px;
border: none;
cursor: pointer;
position: relative;
z-index: 1;
transition: color 0.3s ease;
background-color: white;
/* Added to avoid text overlap */
box-shadow: 0 0 5px rgba(0, 0, 0, 0.1);
/* Subtle shadow for button */
border-radius: 50px;
/* Rounded button for a more elegant look */
}
.add-view-button:hover {
color: #2980b9;
background-color: #ecf0f1;
/* Slight background color change on hover */
}
/* Horizontal divider line extending on both sides */
.add-view-button::before,
.add-view-button::after {
content: '';
position: absolute;
top: 50%;
width: 100px;
height: 1px;
background-color: #ccc;
transform: translateY(-50%);
}
.add-view-button::before {
left: -110px;
/* Adjust to move before the button */
}
.add-view-button::after {
right: -110px;
/* Adjust to move after the button */
}
/* Add the icon before the text */
.add-view-button i {
margin-right: 8px;
font-size: 1.5rem;
}
/* Notification Styles */
.notification {
background-color: #2ecc71;
color: white;
padding: 15px 25px;
border-radius: 5px;
margin-bottom: 10px;
font-size: 16px;
opacity: 0.9;
transition: opacity 0.5s ease-in-out;
}
.log-info {
font-family: monospace;
font-size: 14px;
background-color: #f9f9f9;
padding: 10px;
height: auto;
/* Adjusted height */
overflow-y: auto;
margin-bottom: 1rem;
border: 1px solid #ccc;
white-space: pre-wrap;
width: 100%;
/* Ensure full width */
}
.controls-grid {
display: grid;
grid-template-columns: repeat(auto-fit, minmax(200px, 1fr));
gap: 1rem;
margin-bottom: 1rem;
}
.control-subgrid {
display: grid;
grid-template-columns: repeat(auto-fit, minmax(150px, 1fr));
gap: 0.5rem;
}
.control-item {
display: flex;
flex-direction: column;
}
.checkbox-group {
display: flex;
flex-wrap: wrap;
gap: 0.5rem;
}
.checkbox-label {
display: flex;
align-items: center;
font-size: 0.9rem;
}
.checkbox-label input {
margin-right: 0.25rem;
}
.plot-title {
text-align: center;
margin-bottom: 0.5rem;
}
.plot-container {