Failing installing bold package

[Natacha66]

Hello,

I am trying to install bold package on R studio (version 4.0.4) however I am receiving the message below and can't find how to fix the problem. (I get the same problem when trying remotes::install_github("ropensci/bold").
thank you for your help.

install.packages("bold")
Installing package into ‘C:/Users/natac/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)

There is a binary version available but the source version is later:
binary source needs_compilation
bold 1.2.0 1.3.0 FALSE

installing the source package ‘bold’

trying URL 'https://cran.rstudio.com/src/contrib/bold_1.3.0.tar.gz'
Content type 'application/x-gzip' length 2030481 bytes (1.9 MB)
downloaded 1.9 MB

• installing source package 'bold' ...
  ** package 'bold' correctement décompressé et sommes MD5 vérifiées
  ** using staged installation
  ** R
  Error in parse(outFile) :
  C:/Users/natac/AppData/Local/Temp/RtmpkZnH2o/R.INSTALL53f05db256/bold/R/bold_identify_taxonomy.R:43:24: unexpected input
  42: taxOnly <- b_assert_logical(taxOnly, name = "taxOnly")
  43: hasID <- vapply(x,
  ^
  ERROR: unable to collate and parse R files for package 'bold'
• removing 'C:/Users/natac/Documents/R/win-library/4.0/bold'
  Warning in install.packages :
  installation of package ‘bold’ had non-zero exit status

[salix-d]

I think I see the problem: At line 43 in the file 'bold_identify_taxonomy.R' I used \(x) instead of function(x).
My bad ^^'

I've just fix the github version (and check if there was other cases of that; it seems to be the only one).
Can you retry installing with remotes::install_github("ropensci/bold")?

[salix-d]

package 'bold' correctement décompressé et sommes MD5 vérifiées

En passant, je parle aussi français si c'est plus facile 🙂

[Natacha66]

Salut Salix, Merci beaucoup pour ta réponse rapide 😊 J’ai réessayé mais même pb mais avec une autre fonction cette fois:/ Installing package into ‘C:/Users/natac/Documents/R/win-library/4.0’ (as ‘lib’ is unspecified) * installing *source* package 'bold' ... ** using staged installation ** R Error in parse(outFile) : C:/Users/natac/AppData/Local/Temp/RtmpolhaRT/R.INSTALL66e43f8b4d06/bold/R/bold_stats.R:83:25: unexpected input 82: ov <- as.data.frame(c(x[n],ov)) 83: dd <- lapply(x[-n], \ ^ ERROR: unable to collate and parse R files for package 'bold' * removing 'C:/Users/natac/Documents/R/win-library/4.0/bold' Désolée de t’embêter. Natacha Here is my new mail: ***@***.*** ***@***.******@***.***> will be deleted from july 31st. Dr. Natacha Roux Post doctoral researcher Computational Neuroethology unit Okinawa Institute of Science and Technology (OIST) 1919-1 Tancha, Onna-son, Okinawa, 904-0495 Japan https://groups.oist.jp/cne De : Salix ***@***.***> Envoyé : jeudi 7 septembre 2023 01:09 À : ropensci/bold ***@***.***> Cc : Natacha Roux ***@***.***>; Author ***@***.***> Objet : Re: [ropensci/bold] Failing installing bold package (Issue #99) package 'bold' correctement décompressé et sommes MD5 vérifiées En passant, je parle aussi français si c'est plus facile 🙂 — Reply to this email directly, view it on GitHub<#99 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ATJBSTNUK33FOJIWH4YBOUDXZD67BANCNFSM6AAAAAA4NHV7DY>. You are receiving this because you authored the thread.Message ID: ***@***.******@***.***>>

[salix-d]

Okay je vais corriger ça et revérifier être sûr que y'en a plus d'autre.

Désolée de t’embêter.

Mais non! je suis là pour ça 🙂 (et c'est ma faute de toute façon 😆)

[salix-d]

Finalement, y'en avait 4 autres ^^'

Mais là, ça devrait marcher 🤞

[Natacha66]

ça marche !!!!!! 😃 merci beaucoup !!!! Here is my new mail: ***@***.*** ***@***.******@***.***> will be deleted from july 31st. Dr. Natacha Roux Post doctoral researcher Computational Neuroethology unit Okinawa Institute of Science and Technology (OIST) 1919-1 Tancha, Onna-son, Okinawa, 904-0495 Japan https://groups.oist.jp/cne De : Salix ***@***.***> Envoyé : vendredi 8 septembre 2023 21:52 À : ropensci/bold ***@***.***> Cc : Natacha Roux ***@***.***>; Author ***@***.***> Objet : Re: [ropensci/bold] Failing installing bold package (Issue #99) Finalement, y'en avait 4 autres ^^' Mais là, ça devrait marcher 🤞 — Reply to this email directly, view it on GitHub<#99 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ATJBSTIN3VJKNBM6PBDCCC3XZNZMPANCNFSM6AAAAAA4NHV7DY>. You are receiving this because you authored the thread.Message ID: ***@***.******@***.***>>