Virtual_Lesion_Step3.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Virtual Lesion\n",
    "This series of notebooks is used to determine the evidence for a pathway connecting two ROIs following those described in Pestilli et al.<sup>[1]</sup> and Leong et al.<sup>[2]</sup>.\n",
    "\n",
    "Calculation steps done in this notebook:\n",
    "\n",
    "<ol>\n",
    "    <li>Calculating the normalized difference of the two RMSEs provides the Strength of Evidence</li>\n",
    "    <li>Save the LiFE optimized candidate streamlines between the two ROIs</li>\n",
    "</ol>\n",
    "\n",
    "<sup>[1]</sup> <i>PMID: 25194848</i> <br/>\n",
    "<sup>[2]</sup> <i>PMID: 26748088</i> <br/>"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "import os\n",
    "import numpy as np\n",
    "from nibabel import trackvis as tv\n",
    "from utilities import *\n",
    "import nibabel as nib\n",
    "from dipy.tracking import utils"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "path_saveing = '/data/hcp/data/'\n",
    "path = '/hcp/'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Process subject 100307\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 100408\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 101006\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 101107\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 101309\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 101410\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 101915\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 102008\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 102311\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 102816\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 103111\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 103414\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 103515\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 103818\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 104820\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 105014\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 105115\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 105216\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 106016\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 106319\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 106521\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 107321\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 107422\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 108121\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 108323\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 108525\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 108828\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 109123\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 110411\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 111312\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 111413\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 111716\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 112819\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 113215\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 113619\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 113821\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 113922\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 114419\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 115320\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 116524\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 117122\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 117324\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 118528\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 118730\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 118932\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 119833\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 120111\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 120212\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 120515\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 121618\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 122317\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 122620\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 123117\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 123420\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 123925\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 124220\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 124422\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 124826\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 125525\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 126325\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 126628\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 127630\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 127933\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 128127\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 128632\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 129028\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 130013\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 130316\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 130922\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 131217\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 131722\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 131924\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 132118\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 133019\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 133625\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 133827\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 133928\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 134324\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 135225\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 135528\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 135932\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 136227\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 136833\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 137027\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 137128\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 137633\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 137936\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 138231\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 138534\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 139233\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 139637\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 140117\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 140420\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 140824\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 140925\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 141422\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 141826\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 142626\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 142828\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 143325\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 144226\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 144832\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 145834\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 146331\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 146432\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 147030\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 147737\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 148032\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 148335\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 148840\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 148941\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 149337\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 149539\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 149741\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 150423\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 150524\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 150625\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 150726\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 151223\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 151526\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 151627\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 151728\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 152831\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 153025\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 153429\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 153833\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 154431\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 154734\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 154835\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 154936\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 155231\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 155635\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 156637\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 157336\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 157437\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 158035\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 158136\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 158540\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 159138\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 159239\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 159340\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 159441\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 160123\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 160830\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 161327\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 161630\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 161731\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 162026\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 162228\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 162329\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 162733\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 163129\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 163331\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 163432\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 163836\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 164030\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 164131\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 164939\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 165032\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 165840\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 166438\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 167036\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 167743\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 168139\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Could not save streamlines, 0 streamlines detected\n",
      "Process subject 168341\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 169343\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 169444\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 170934\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 171431\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 171633\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 172029\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 172130\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 172332\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 172534\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 172938\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 173132\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 173334\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 173435\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 173536\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 173940\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 175035\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 175439\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 176542\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 177645\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 177746\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 178142\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 178748\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 178950\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 179346\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 179548\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 180129\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 180432\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 180836\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 180937\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 181131\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 181232\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 182739\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 182840\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 183034\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 185442\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 186141\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 187143\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 187547\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 187850\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 189349\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 190031\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 191033\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 191336\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 191437\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 191841\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 192439\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 192540\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 192843\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 193239\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 194140\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 194645\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 194847\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 195041\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 195647\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 195849\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 196144\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 196750\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 197348\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 197550\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 197651\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 198350\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 198451\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 198855\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 199150\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 199251\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 199453\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 199655\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 199958\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 200109\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 200614\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 201414\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 201818\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 203418\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 204016\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 204521\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 205119\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 205220\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 205725\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 205826\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 208024\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 208226\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 208428\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 209935\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 210011\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 210415\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 210617\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 211215\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 211316\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 211417\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 211720\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 211922\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 212116\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 212217\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 212318\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 212419\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 214019\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 214221\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 214726\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 217126\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 217429\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 221319\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 224022\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 231928\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 233326\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 239944\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 245333\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 246133\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 249947\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 250427\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 250932\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 251833\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 255639\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 268850\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 284646\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 285345\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 285446\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 289555\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 290136\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 293748\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 298051\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 298455\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 303119\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 303624\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 304020\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 307127\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 316633\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 329440\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 334635\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 339847\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 351938\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 352132\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 352738\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 355239\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 356948\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 365343\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 366042\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 366446\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 371843\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 377451\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 380036\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 382242\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 385450\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 386250\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 390645\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 395958\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 397154\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 397760\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 397861\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 412528\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 414229\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 415837\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 422632\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 433839\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 436239\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 436845\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 441939\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 445543\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 448347\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 465852\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 473952\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 475855\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 479762\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 480141\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 485757\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 486759\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 497865\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 499566\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 500222\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 510326\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 519950\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 521331\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 522434\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 530635\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 531536\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 540436\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 541943\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 545345\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 547046\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 559053\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 561242\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 562446\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 565452\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 566454\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 567052\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 567961\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 568963\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 570243\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 571548\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 573249\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 573451\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 579665\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 580044\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 580347\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 581349\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 585862\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 586460\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 592455\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 594156\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 598568\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 599469\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 599671\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 601127\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 613538\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 620434\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 622236\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 623844\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 627549\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 638049\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 644044\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 645551\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 654754\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 665254\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 672756\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 673455\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 677968\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 679568\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 680957\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 683256\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 685058\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 687163\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 690152\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 695768\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 704238\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 705341\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 709551\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 713239\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 715041\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 715647\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 729254\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 729557\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 732243\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 734045\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 742549\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 748258\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 748662\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 749361\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 751348\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 753251\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 756055\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 759869\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 761957\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 765056\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 770352\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 771354\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 779370\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 782561\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 784565\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 786569\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 788876\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 789373\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 792564\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 792766\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 802844\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 814649\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 816653\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 826353\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 826454\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 833148\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 833249\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 837560\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 837964\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 845458\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 849971\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 856766\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 857263\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 859671\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 861456\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 865363\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 871762\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 871964\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 872158\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 872764\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 877168\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 877269\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 885975\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 887373\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 889579\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 894673\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 896778\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 896879\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 898176\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 899885\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 901038\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 901139\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 901442\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 904044\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 907656\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 910241\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 912447\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 917255\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 922854\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 930449\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 932554\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 957974\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 958976\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 959574\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 965367\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 965771\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 978578\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 979984\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 983773\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 984472\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 987983\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 991267\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n",
      "Process subject 992774\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    Not all necessary files exist, skip subject\n",
      "Process subject 994273\n",
      "    Strength of Evidence does not exist, start calculation\n",
      "    All necessary files exist, continue\n",
      "    Calculate optimized Fibers\n"
     ]
    }
   ],
   "source": [
    "subjects = os.listdir(path_saveing)\n",
    "subjects_sorted = sorted(subjects)\n",
    "subjects_sorted.remove('.nii.gz')\n",
    "\n",
    "for subject in subjects_sorted:\n",
    "    print 'Process subject ' + subject\n",
    "\n",
    "    if os.path.isfile(os.path.join(path_saveing, subject, 'RVLPFC2FIRSTamyg_bigRight_Strength_of_Evidence3.txt')) == False:\n",
    "        print \"    Strength of Evidence does not exist, start calculation\"\n",
    "        \n",
    "        if os.path.isfile(os.path.join(path_saveing, subject, 'RVLPFC2FIRSTamyg_bigRight_neighborhood.nii.gz')) == True and os.path.isfile(os.path.join(path_saveing, subject, 'RVLPFC2FIRSTamyg_bigRight_LiFE_rmse_with_path.nii.gz')) == True and os.path.isfile(os.path.join(path_saveing, subject, 'RVLPFC2FIRSTamyg_bigRight_LiFE_rmse_without_path.nii.gz')) == True and os.path.isfile(os.path.join(path, subject, 'T1w/Diffusion/data.nii.gz')) == True:\n",
    "            print \"    All necessary files exist, continue\"\n",
    "            \n",
    "            directory_output = os.path.join(path_saveing, subject)\n",
    "\n",
    "            mask = load_nifti(path_saveing + subject + \"/RVLPFC2FIRSTamyg_bigRight_neighborhood\")\n",
    "            mask = mask.astype(bool)\n",
    "\n",
    "            with_path = load_nifti(path_saveing + subject + \"/RVLPFC2FIRSTamyg_bigRight_LiFE_rmse_with_path\")\n",
    "            without_path = load_nifti(path_saveing + subject + \"/RVLPFC2FIRSTamyg_bigRight_LiFE_rmse_without_path\")\n",
    "\n",
    "            data, affine, gtab, header, shell_mask = load_hcp_data(path, subject)\n",
    "\n",
    "            noise = data[..., gtab.b0s_mask].std(axis=3, ddof=1) \n",
    "\n",
    "            print \"    Total Error divided by STD before adding: %.2f\" % np.sum(without_path[mask]/noise[mask])\n",
    "            print \"    Total Error divided by STD after adding : %.2f\" % np.sum(with_path[mask]/noise[mask])\n",
    "            strength = np.sum(without_path[mask]/noise[mask]) - np.sum(with_path[mask]/noise[mask])\n",
    "            print \"    Strength of Evidence                    : %.2f\" % strength\n",
    "\n",
    "            np.savetxt(os.path.join(path_saveing, subject, 'RVLPFC2FIRSTamyg_bigRight_Strength_of_Evidence2.txt'), np.array([strength]), delimiter=',')\n",
    "\n",
    "            print \"    Calculate optimized Fibers\"\n",
    "            beta_with = load_matlab_file(path_saveing + subject + \"/RVLPFC2FIRSTamyg_bigRight_LiFE_betas_with_path\")['beta']\n",
    "\n",
    "            streams, hdr = tv.read(path_saveing + subject + \"/RVLPFC2FIRSTamyg_bigRight_clustered.trk\")#, points_space='voxel'\n",
    "            streamlines = [i[0] for i in streams]\n",
    "\n",
    "            weights_with = np.squeeze(beta_with[:, -len(streamlines):])\n",
    "            optimized_with = streamlines[-len(streamlines):]\n",
    "            \n",
    "            try:\n",
    "                optimized_sl = list(np.array(optimized_with)[np.where(weights_with > 0)])\n",
    "\n",
    "                optimized_save = ((sl, None, None) for sl in optimized_sl)\n",
    "                tv.write(os.path.join(path_saveing, subject, 'RVLPFC2FIRSTamyg_bigRight_optimized.trk'), optimized_save,  hdr_mapping=hdr)\n",
    "            except:\n",
    "                print \"Could not save streamlines, 0 streamlines detected\"\n",
    "        else:\n",
    "            print \"    Not all necessary files exist, skip subject\"\n",
    "    else:\n",
    "        print \"Strength of Evidence Exists already, skip subject\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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