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imshow3Dfull.m
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imshow3Dfull.m
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function imshow3Dfull( Img, disprange )
%IMSHOW3DFULL displays 3D grayscale or RGB images from three perpendicular
%views (i.e. axial, sagittal, and coronal) in slice by slice fashion with
%mouse based slice browsing and window and level adjustment control.
%
% Usage:
% imshow3Dfull ( Image )
% imshow3Dfull ( Image , [] )
% imshow3Dfull ( Image , [LOW HIGH] )
%
% Image: 3D image MxNxKxC (K slices of MxN images) C is either 1
% (for grayscale images) or 3 (for RGB images)
% [LOW HIGH]: display range that controls the display intensity range of
% a grayscale image (default: the widest available range)
%
% Use the scroll bar or mouse scroll wheel to switch between slices. To
% adjust window and level values keep the mouse right button pressed and
% drag the mouse up and down (for level adjustment) or right and left (for
% window adjustment). Window and level adjustment control works only for
% grayscale images.
%
% Use 'A', 'S', and 'C' buttons to switch between axial, sagittal and
% coronal views, respectivelly.
%
% "Auto W/L" button adjust the window and level automatically
%
% While "Fine Tune" check box is checked the window/level adjustment gets
% 16 times less sensitive to mouse movement, to make it easier to control
% display intensity rang.
%
% Note: The sensitivity of mouse based window and level adjustment is set
% based on the user defined display intensity range; the wider the range
% the more sensitivity to mouse drag.
%
%
% Example
% --------
% % Display an image (MRI example)
% load mri
% Image = squeeze(D);
% figure,
% imshow3Dfull(Image)
%
% % Display the image, adjust the display range
% figure,
% imshow3Dfull(Image,[20 100]);
%
% See also IMSHOW.
%
% - Maysam Shahedi (mshahedi@gmail.com)
% - Released: 1.0.0 Date: 2013/04/15
% - Revision: 1.1.0 Date: 2013/04/19
% - Revision: 2.0.0 Date: 2014/08/05
% - Revision: 2.5.0 Date: 2016/09/22
% - Revision: 2.5.1 Date: 2018/10/29
%
sno = size(Img); % image size
sno_a = sno(3); % number of axial slices
S_a = round(sno_a/2);
sno_s = sno(2); % number of sagittal slices
S_s = round(sno_s/2);
sno_c = sno(1); % number of coronal slices
S_c = round(sno_c/2);
S = S_a;
sno = sno_a;
global InitialCoord;
MinV = 0;
MaxV = max(Img(:));
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
FineTuneC = [1 1/16]; % Regular/Fine-tune mode coefficients
if isa(Img,'uint8')
MaxV = uint8(Inf);
MinV = uint8(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'uint16')
MaxV = uint16(Inf);
MinV = uint16(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'uint32')
MaxV = uint32(Inf);
MinV = uint32(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'uint64')
MaxV = uint64(Inf);
MinV = uint64(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'int8')
MaxV = int8(Inf);
MinV = int8(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'int16')
MaxV = int16(Inf);
MinV = int16(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'int32')
MaxV = int32(Inf);
MinV = int32(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'int64')
MaxV = int64(Inf);
MinV = int64(-Inf);
LevV = (double( MaxV) + double(MinV)) / 2;
Win = double(MaxV) - double(MinV);
WLAdjCoe = (Win + 1)/1024;
elseif isa(Img,'logical')
MaxV = 0;
MinV = 1;
LevV =0.5;
Win = 1;
WLAdjCoe = 0.1;
end
ImgAx = Img;
if verLessThan('matlab', '8')
ImgSg = flipdim(permute(Img, [3 1 2 4]),1); % Sagittal view image
ImgCr = flipdim(permute(Img, [3 2 1 4]),1); % Coronal view image
else
ImgSg = flip(permute(Img, [3 1 2 4]),1); % Sagittal view image
ImgCr = flip(permute(Img, [3 2 1 4]),1); % Coronal view image
end
View = 'A';
SFntSz = 9;
LFntSz = 10;
WFntSz = 10;
VwFntSz = 10;
LVFntSz = 9;
WVFntSz = 9;
BtnSz = 10;
ChBxSz = 10;
if (nargin < 2)
[Rmin Rmax] = WL2R(Win, LevV);
elseif numel(disprange) == 0
[Rmin Rmax] = WL2R(Win, LevV);
else
LevV = (double(disprange(2)) + double(disprange(1))) / 2;
Win = double(disprange(2)) - double(disprange(1));
WLAdjCoe = (Win + 1)/1024;
[Rmin Rmax] = WL2R(Win, LevV);
end
clf
hdl_im = axes('position',[0,0.2,1,0.8]);
imshow(squeeze(Img(:,:,S,:)), [Rmin Rmax])
FigPos = get(gcf,'Position');
S_Pos = [50 50 uint16(FigPos(3)-100)+1 20];
Stxt_Pos = [50 70 uint16(FigPos(3)-100)+1 15];
Wtxt_Pos = [20 20 60 20];
Wval_Pos = [75 20 60 20];
Ltxt_Pos = [140 20 45 20];
Lval_Pos = [180 20 60 20];
BtnStPnt = uint16(FigPos(3)-210)+1;
if BtnStPnt < 360
BtnStPnt = 360;
end
Btn_Pos = [BtnStPnt 20 80 20];
ChBx_Pos = [BtnStPnt+90 20 100 20];
Vwtxt_Pos = [255 20 35 20];
VAxBtn_Pos = [290 20 15 20];
VSgBtn_Pos = [310 20 15 20];
VCrBtn_Pos = [330 20 15 20];
if sno > 1
shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end
ltxthand = uicontrol('Style', 'text','Position', Ltxt_Pos,'String','Level: ', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', LFntSz);
wtxthand = uicontrol('Style', 'text','Position', Wtxt_Pos,'String','Window: ', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', WFntSz);
lvalhand = uicontrol('Style', 'edit','Position', Lval_Pos,'String',sprintf('%6.0f',LevV), 'BackgroundColor', [1 1 1], 'FontSize', LVFntSz,'Callback', @WinLevChanged);
wvalhand = uicontrol('Style', 'edit','Position', Wval_Pos,'String',sprintf('%6.0f',Win), 'BackgroundColor', [1 1 1], 'FontSize', WVFntSz,'Callback', @WinLevChanged);
Btnhand = uicontrol('Style', 'pushbutton','Position', Btn_Pos,'String','Auto W/L', 'FontSize', BtnSz, 'Callback' , @AutoAdjust);
ChBxhand = uicontrol('Style', 'checkbox','Position', ChBx_Pos,'String','Fine Tune', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', ChBxSz);
Vwtxthand = uicontrol('Style', 'text','Position', Vwtxt_Pos,'String','View: ', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', LFntSz);
VAxBtnhand = uicontrol('Style', 'pushbutton','Position', VAxBtn_Pos,'String','A', 'FontSize', BtnSz, 'Callback' , @AxialView);
VSgBtnhand = uicontrol('Style', 'pushbutton','Position', VSgBtn_Pos,'String','S', 'FontSize', BtnSz, 'Callback' , @SagittalView);
VCrBtnhand = uicontrol('Style', 'pushbutton','Position', VCrBtn_Pos,'String','C', 'FontSize', BtnSz, 'Callback' , @CoronalView);
set (gcf, 'WindowScrollWheelFcn', @mouseScroll);
set (gcf, 'ButtonDownFcn', @mouseClick);
set(get(gca,'Children'),'ButtonDownFcn', @mouseClick);
set(gcf,'WindowButtonUpFcn', @mouseRelease)
set(gcf,'ResizeFcn', @figureResized)
% -=< Figure resize callback function >=-
function figureResized(object, eventdata)
FigPos = get(gcf,'Position');
S_Pos = [50 45 uint16(FigPos(3)-100)+1 20];
Stxt_Pos = [50 65 uint16(FigPos(3)-100)+1 15];
BtnStPnt = uint16(FigPos(3)-210)+1;
if BtnStPnt < 360
BtnStPnt = 360;
end
Btn_Pos = [BtnStPnt 20 80 20];
ChBx_Pos = [BtnStPnt+90 20 100 20];
if sno > 1
set(shand,'Position', S_Pos);
end
set(stxthand,'Position', Stxt_Pos);
set(ltxthand,'Position', Ltxt_Pos);
set(wtxthand,'Position', Wtxt_Pos);
set(lvalhand,'Position', Lval_Pos);
set(wvalhand,'Position', Wval_Pos);
set(Btnhand,'Position', Btn_Pos);
set(ChBxhand,'Position', ChBx_Pos);
set(Vwtxthand,'Position', Vwtxt_Pos);
set(VAxBtnhand,'Position', VAxBtn_Pos);
set(VSgBtnhand,'Position', VSgBtn_Pos);
set(VCrBtnhand,'Position', VCrBtn_Pos);
end
% -=< Slice slider callback function >=-
function SliceSlider (hObj,event, Img)
S = round(get(hObj,'Value'));
set(get(gca,'children'),'cdata',squeeze(Img(:,:,S,:)))
caxis([Rmin Rmax])
if sno > 1
set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
else
set(stxthand, 'String', '2D image');
end
end
% -=< Mouse scroll wheel callback function >=-
function mouseScroll (object, eventdata)
UPDN = eventdata.VerticalScrollCount;
S = S - UPDN;
if (S < 1)
S = 1;
elseif (S > sno)
S = sno;
end
if sno > 1
set(shand,'Value',S);
set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
else
set(stxthand, 'String', '2D image');
end
set(get(gca,'children'),'cdata',squeeze(Img(:,:,S,:)))
end
% -=< Mouse button released callback function >=-
function mouseRelease (object,eventdata)
set(gcf, 'WindowButtonMotionFcn', '')
end
% -=< Mouse click callback function >=-
function mouseClick (object, eventdata)
MouseStat = get(gcbf, 'SelectionType');
if (MouseStat(1) == 'a') % RIGHT CLICK
InitialCoord = get(0,'PointerLocation');
set(gcf, 'WindowButtonMotionFcn', @WinLevAdj);
end
end
% -=< Window and level mouse adjustment >=-
function WinLevAdj(varargin)
PosDiff = get(0,'PointerLocation') - InitialCoord;
Win = Win + PosDiff(1) * WLAdjCoe * FineTuneC(get(ChBxhand,'Value')+1);
LevV = LevV - PosDiff(2) * WLAdjCoe * FineTuneC(get(ChBxhand,'Value')+1);
if (Win < 1)
Win = 1;
end
[Rmin, Rmax] = WL2R(Win,LevV);
caxis([Rmin, Rmax])
set(lvalhand, 'String', sprintf('%6.0f',LevV));
set(wvalhand, 'String', sprintf('%6.0f',Win));
InitialCoord = get(0,'PointerLocation');
end
% -=< Window and level text adjustment >=-
function WinLevChanged(varargin)
LevV = str2double(get(lvalhand, 'string'));
Win = str2double(get(wvalhand, 'string'));
if (Win < 1)
Win = 1;
end
[Rmin, Rmax] = WL2R(Win,LevV);
caxis([Rmin, Rmax])
end
% -=< Window and level to range conversion >=-
function [Rmn Rmx] = WL2R(W,L)
Rmn = L - (W/2);
Rmx = L + (W/2);
if (Rmn >= Rmx)
Rmx = Rmn + 1;
end
end
% -=< Window and level auto adjustment callback function >=-
function AutoAdjust(object,eventdata)
Win = double(max(Img(:))-min(Img(:)));
Win (Win < 1) = 1;
LevV = double(min(Img(:)) + (Win/2));
[Rmin, Rmax] = WL2R(Win,LevV);
caxis([Rmin, Rmax])
set(lvalhand, 'String', sprintf('%6.0f',LevV));
set(wvalhand, 'String', sprintf('%6.0f',Win));
end
% -=< Axial view callback function >=-
function AxialView(object,eventdata)
if View == 'S'
S_s = S;
elseif View == 'C'
S_c = S;
end
View = 'A';
Img = ImgAx;
S = S_a;
sno = sno_a;
cla(hdl_im);
hdl_im = axes('position',[0,0.2,1,0.8]);
imshow(squeeze(Img(:,:,S,:)), [Rmin Rmax])
if sno > 1
shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end
caxis([Rmin Rmax])
if sno > 1
set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
else
set(stxthand, 'String', '2D image');
end
set(get(gca,'children'),'cdata',squeeze(Img(:,:,S,:)))
set (gcf, 'ButtonDownFcn', @mouseClick);
set(get(gca,'Children'),'ButtonDownFcn', @mouseClick);
end
% -=< Sagittal view callback function >=-
function SagittalView(object,eventdata)
if View == 'A'
S_a = S;
elseif View == 'C'
S_c = S;
end
View = 'S';
Img = ImgSg;
S = S_s;
sno = sno_s;
cla(hdl_im);
hdl_im = axes('position',[0,0.2,1,0.8]);
imshow(squeeze(Img(:,:,S,:)), [Rmin Rmax])
if sno > 1
shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end
caxis([Rmin Rmax])
if sno > 1
set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
else
set(stxthand, 'String', '2D image');
end
set(get(gca,'children'),'cdata',squeeze(Img(:,:,S,:)))
set (gcf, 'ButtonDownFcn', @mouseClick);
set(get(gca,'Children'),'ButtonDownFcn', @mouseClick);
end
% -=< Coronal view callback function >=-
function CoronalView(object,eventdata)
if View == 'A'
S_a = S;
elseif View == 'S'
S_s = S;
end
View = 'C';
Img = ImgCr;
S = S_c;
sno = sno_c;
cla(hdl_im);
hdl_im = axes('position',[0,0.2,1,0.8]);
imshow(squeeze(Img(:,:,S,:)), [Rmin Rmax])
if sno > 1
shand = uicontrol('Style', 'slider','Min',1,'Max',sno,'Value',S,'SliderStep',[1/(sno-1) 10/(sno-1)],'Position', S_Pos,'Callback', {@SliceSlider, Img});
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String',sprintf('Slice# %d / %d',S, sno), 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
else
stxthand = uicontrol('Style', 'text','Position', Stxt_Pos,'String','2D image', 'BackgroundColor', [0.8 0.8 0.8], 'FontSize', SFntSz);
end
caxis([Rmin Rmax])
if sno > 1
set(stxthand, 'String', sprintf('Slice# %d / %d',S, sno));
else
set(stxthand, 'String', '2D image');
end
set(get(gca,'children'),'cdata',squeeze(Img(:,:,S,:)))
set (gcf, 'ButtonDownFcn', @mouseClick);
set(get(gca,'Children'),'ButtonDownFcn', @mouseClick);
end
end
% -=< Maysam Shahedi (mshahedi@gmail.com), September 22, 2016>=-