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    391 repositories

    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      electrophysiologyigor-prosupported
      IGOR Pro
      •
      Other
      •6•22•290•11•Updated Oct 14, 2024Oct 14, 2024

    • TEM_config

      Public
      0•0•2•0•Updated Oct 14, 2024Oct 14, 2024

    • TEM_comms

      Public
      Pigeon messages for the next generation TEM imaging system
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • deep-neurographs

      Public
      Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.
      Python
      •
      MIT License
      •0•3•0•0•Updated Oct 12, 2024Oct 12, 2024

    • npc_sessions_cache

      Public
      Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.
      Jupyter Notebook
      •0•0•0•0•Updated Oct 12, 2024Oct 12, 2024

    • transcriptomic_clustering

      Public
      improved clustering pipeline for transcriptomic data
      Python
      •
      Other
      •1•3•17•5•Updated Oct 11, 2024Oct 11, 2024

    • dynamic_routing_analysis

      Public
      Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • npc_ephys

      Public
      Tools for accessing and processing raw ephys data, compatible with data in the cloud.
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • sciduck

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•10•0•Updated Oct 11, 2024Oct 11, 2024

    • biofile-finder

      Public
      An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•47•2•Updated Oct 11, 2024Oct 11, 2024

    • ACE

      Public
      R Shiny app for comparison of annotations (e.g., cell type assignments)
      R
      •
      Other
      •1•1•10•0•Updated Oct 10, 2024Oct 10, 2024

    • distributed-vae

      Public
      Distributed training of multi-arm variational autoencoding networks
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 10, 2024Oct 10, 2024

    • RNNsComplexity

      Public
      Lyapunov Dynamics in RNNs
      Python
      •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • np_workflows

      Public
      Jupyter Notebook
      •3•1•2•0•Updated Oct 10, 2024Oct 10, 2024

    • cell_type_mapper

      Public
      Repository for storing prototype functionality implementations for the BKP
      Python
      •
      Other
      •4•18•3•2•Updated Oct 10, 2024Oct 10, 2024

    • scrattch.taxonomy

      Public
      Allen Institute Taxonomy building R package
      HTML
      •1•1•8•0•Updated Oct 10, 2024Oct 10, 2024

    • EM_MC_paper_figures

      Public
      Notebooks for analyzing and generating figures for EM MC paper
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Oct 10, 2024Oct 10, 2024

    • txtox

      Public
      Experiments to relate gene expression and anatomical location
      Jupyter Notebook
      •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • mtrain_regimens

      Public
      Repository to track training stages and regimens for visual behavior
      Python
      •
      Other
      •4•2•14•0•Updated Oct 8, 2024Oct 8, 2024

    • openscope_psycode

      Public
      This repository contains the stimulus behind the PsyCode project
      Jupyter Notebook
      •
      Apache License 2.0
      •8•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • EducationAndEngagement

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 5, 2024Oct 5, 2024

    • jem

      Public
      Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
      HTML
      •
      Other
      •3•3•0•0•Updated Oct 4, 2024Oct 4, 2024

    • merquaco

      Public
      Python
      •
      Other
      •2•1•0•0•Updated Oct 4, 2024Oct 4, 2024

    • npc_samstim

      Public
      Tools for processing stim data from Sam's DynamicRoutingTask, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • npc_stim

      Public
      Tools for accessing and processing stim data, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • openscope_mousemotion

      Public
      Moving dot stimuli for the OpenScope MouseMotion project
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • microns_tutorial

      Public
      MICrONS databook and analysis tutorials
      Jupyter Notebook
      •2•1•0•0•Updated Oct 3, 2024Oct 3, 2024

    • npc_sessions

      Public
      Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
      Python
      •1•1•54•1•Updated Oct 1, 2024Oct 1, 2024

    • neuroanalysis-test-data

      Public
      Test data submodule for neuroanalysis package
      1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • npc_sync

      Public
      Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024