Repositories list

• tr_detection

  Public
  TR detection across plants.

  Shell

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• extract_nhmmer_tblout

  Public
  Get the nhmmer identified sequences back from a FASTA file.

  Rust

  •0•1•0•0•Updated Oct 15, 2024Oct 15, 2024

• coding_club

  Public
  Coding club ideas

  R

  •0•4•0•0•Updated Oct 14, 2024Oct 14, 2024

• plopaf

  Public
  A PAF plotter based heavily on https://github.com/ekg/pafplot.

  Rust

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• rep

  Public
  Rust

  •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• paf

  Public
  A PAF file parser.

  Rust

  •

  MIT License

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• mmft

  Public
  My Minimal Fasta Toolkit

  Rust

  •

  MIT License

  •0•6•0•0•Updated Oct 3, 2024Oct 3, 2024

• undergraduate_project

  Public
  Undergraduate project template

  R

  •4•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• psd

  Public
  PAF sequence divergence calculations.

  Rust

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• mars

  Public
  Max's restricted shell

  Shell

  •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• bioinformatics

  Public
  General help and topics on bioinformatics

  HTML

  •0•1•0•0•Updated Aug 16, 2024Aug 16, 2024

• hmm_tblout

  Public
  Parse `--tblout` files from `nhmmer`.

  Rust

  •

  MIT License

  •0•0•0•0•Updated May 10, 2024May 10, 2024

• reputils

  Public
  A small collection of command line functions to deal with TE alignments.

  Rust

  •

  MIT License

  •0•0•2•0•Updated Mar 18, 2024Mar 18, 2024

• cbsrs

  Public
  Circular Binary Segmentation for Rust.

  Rust

  •

  MIT License

  •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024