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CHANGELOG.md

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nf-core/rnavar: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

[1.0.0] nfcore/rnavar - 2022/06/20

First production release of the pipeline with latest software versions.

This version is based on GATK4 best-practices for RNAseq Ref and it includes:

Added

  • Added FastQC v0.11.9 from nf-core modules for read-level QC and summary.
  • Added STAR v2.7.9a from nf-core modules for read alignment to reference genome.
  • Added Samtools v1.15.1 from nf-core modules for alignment statistics and QC.
  • Added GATK v4.2.6.1 from nf-core modules for alignment post-processing, variant calling and filtration.
  • Added Tabix v1.11 from nf-core modules for indexing BAM ann VCF files.
  • Added SnpEff v5.0 from nf-core modules for variant annotation.
  • Added Ensembl VEP v104.3 from nf-core modules for variant annotation.
  • Added MultiQC v1.12 from nf-core modules for QC summary report.
  • Added Scatter i.e., one interval-list into many interval-files to run multiple processes in parallel.

Thanks to everyone that contributed to this release. Special thanks to @maxulysse and @FriederikeHanssen for your review and valuable suggestions.