editing GO term of annotations with a NOT qualifier does not function properly

[krchristie]

@LiNiMGI noticed this behavior and asked me to confirm and submit a ticket if needed.

Using the Standard Annotations editor to edit the GO term of an annotation with a NOT qualifier produces odd and undesirable results.

Here is the Standard Annotations editor with a single NOT annotation shown. Notice the contents of the RELATIONSHIP field: "NOT involved in":

Having edited the TERM field, notice that the contents of the RELATIONSHIP field is now only "involved in" WITHOUT the "NOT":

Clicking the "Save" button in the bar at the top commits the change still missing the "NOT" qualifier in the RELATIONSHIP field:

Looking at the display of the same model in the Graph Editor suggests that the Standard Annotations editor has added the new GO term WITHOUT removing the original GO term and it's associated "NOT" qualifier:

The annotation Preview of this model suggests the same thing as the Graph Editor. Notice the 4th annotation in the table that has "involved_in|NOT" in the Qualifier field, but has the GO ID instead of the term name in the GO Term field:

[krchristie]

My test edits of every other editable field of a different NOT annotation in the same model did not produce any problems with the NOT qualifier and the original term it was associated with.

Here is a link to my test model: http://noctua.geneontology.org/editor/graph/gomodel:66f5faaa00000992

[vanaukenk]

Thank you for the feedback @krchristie @LiNiMGI

@tmushayahama - can you please look into this bug? Please let me know if you want to look at it together. I can reproduce what Karen and Li are seeing.

[krchristie]

It's also worth noting that the same behavior occurs in the Noctua-Form editor. I submitted a ticket for that in the noctua-form repository: geneontology/noctua-form#246