diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml index 2475d53..4ca6556 100644 --- a/.github/workflows/tests.yaml +++ b/.github/workflows/tests.yaml @@ -28,5 +28,11 @@ jobs: with: python-version: ${{ matrix.python }} - run: pip install poetry && poetry install - - run: cd tests && ./mktd.sh && python -m unittest -v - - run: demerge -d data/cosmos -m "--debug" 20171103184436 + - name: Run unit tests for merge functions + run: | + deshima-rawdata download 20171103184436 -d data -e + cd tests && ./mktd.sh && python -m unittest -v + - name: Run a comprehensive merge test + run: | + deshima-rawdata download 20231108052231 -d data -e + demerge -d data -m "--debug" 20231108052231 diff --git a/.gitignore b/.gitignore index 111fe0e..f6d8458 100644 --- a/.gitignore +++ b/.gitignore @@ -1,5 +1,7 @@ # Created by package authors cache/ +data/* +!/data/.gitkeep graph/ tests/testdata* *~ diff --git a/.gitmodules b/.gitmodules index 3244871..e69de29 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,3 +0,0 @@ -[submodule "data"] - path = data - url = https://github.com/deshima-dev/testdata.git diff --git a/README.md b/README.md index 85099d6..f0223b6 100644 --- a/README.md +++ b/README.md @@ -57,10 +57,22 @@ poetry install ## 解析の実行例 -以下のコマンドでOBSID=20171103184436の解析を行います。観測データはdata/cosmosに格納されているものとします。 +以下のコマンドでOBSID=20171103184436の解析を行います。観測データはdataに格納されているものとします。 ```shell -demerge -d data/cosmos 20171103184436 +demerge -d data 20171103184436 +``` + +以下のコマンドでテスト用のデータをダウンロードすることができます。 + +```shell +deshima-rawdata download 20171103184436 -d data -e +``` + +どのデータがダウンロードできるかは、データリストをご確認ください。 + +```shell +deshima-rawdata list ``` ### demergeコマンドの引数 @@ -69,7 +81,7 @@ demerge -d data/cosmos 20171103184436 引数 | 説明 | デフォルト --- | --- | --- -`-d` | 観測データディレクトリの指定 | `data/cosmos` +`-d` | 観測データディレクトリの指定 | `data` `-c` | キャッシュディレクトリを指定 | `cache` `-g` | グラフディレクトリを指定 | `graph` `-b` | DDBファイルを指定 | `data/ddb/ddb_20180619.fits.gz` @@ -80,25 +92,24 @@ demerge -d data/cosmos 20171103184436 ``` data -├── cosmos -│   ├── cosmos_20171103184436 -│   │   ├── 20171103184436_info.txt -│   │   ├── 20171103184436.ant -│   │   ├── 20171103184436.cabin -│   │   ├── 20171103184436.fits.gz -│   │   ├── 20171103184436.misti -│   │   ├── 20171103184436.obs -│   │   ├── 20171103184436.roomchop -│   │   ├── 20171103184436.skychop -│   │   ├── 20171103184436.tsky -│   │   ├── 20171103184436.wea -│   │   ├── kids.list -│   │   ├── localsweep_info.txt -│   │   ├── localsweep.sweep -│   │   └── pretune -│   │   ├── kids.list -│   │   ├── localsweep_info.txt -│   │   └── localsweep.sweep +├── cosmos_20171103184436 +│   ├── 20171103184436_info.txt +│   ├── 20171103184436.ant +│   ├── 20171103184436.cabin +│   ├── 20171103184436.fits.gz +│   ├── 20171103184436.misti +│   ├── 20171103184436.obs +│   ├── 20171103184436.roomchop +│   ├── 20171103184436.skychop +│   ├── 20171103184436.tsky +│   ├── 20171103184436.wea +│   ├── kids.list +│   ├── localsweep_info.txt +│   ├── localsweep.sweep +│   └── pretune +│   ├── kids.list +│   ├── localsweep_info.txt +│   └── localsweep.sweep ((( 続く ))) ``` @@ -175,7 +186,7 @@ cd /path/to/demerge/test python test_merge_to_dems.py # merge_to_dems()関数のテストを実行します ``` -test_merge_to_dems.pyを実行するにはダミーデータとテストデータが必要になります。ダミーデータはmktd.shスクリプトを実行することで生成されます。テストデータはdata/cosmos/cosmos_20171103184436/の中のものを使います。 +test_merge_to_dems.pyを実行するにはダミーデータとテストデータが必要になります。ダミーデータはmktd.shスクリプトを実行することで生成されます。テストデータはdata/cosmos_20171103184436/の中のものを使います。 ## merge_to_dems.pyについて diff --git a/data b/data deleted file mode 160000 index 5675d48..0000000 --- a/data +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 5675d4802705921fc43ebd42f9295d5d530e417b diff --git a/data/.gitkeep b/data/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/demerge/ddb_20231029.fits.gz b/demerge/ddb_20231029.fits.gz new file mode 100755 index 0000000..db7a2fa Binary files /dev/null and b/demerge/ddb_20231029.fits.gz differ diff --git a/demerge/run.sh b/demerge/run.sh index c25a597..f708b3c 100755 --- a/demerge/run.sh +++ b/demerge/run.sh @@ -20,7 +20,7 @@ # # 使用例 # ------ -# $ ./run.sh -d data/cosmos 20171103184836 +# $ ./run.sh -d data 20171103184836 # # # 指定可能なオプション @@ -35,6 +35,8 @@ # -p プロット実行オプションの指定 # +DEMERGE="$(cd "$(dirname "${BASH_SOURCE:-$0}")" && pwd)" +DEFAULT_DDB="${DEMERGE}/ddb_20231029.fits.gz" NCPU=`python -c "import multiprocessing as m; print(m.cpu_count() - 1);"` # ================== @@ -76,10 +78,10 @@ if [ -z "$GRAPH_DIR" ]; then GRAPH_DIR="graph" # 作成したグラフを格納する場所の規定値 fi if [ -z "$DATA_DIR" ]; then - DATA_DIR="data/cosmos" # 観測データの場所の規定値 + DATA_DIR="data" # 観測データの場所の規定値 fi if [ -z "$DDB_FILE" ]; then - DDB_FILE="data/ddb/ddb_20180619.fits.gz" # DDBファイルの規定値 + DDB_FILE="${DEFAULT_DDB}" # DDBファイルの既定値 fi if [ -z "$OUT_DIR" ]; then OUT_DIR="${CACHE_DIR}" # 出力ディレクトリの規定値 diff --git a/poetry.lock b/poetry.lock index 9e30a8f..9f5f3c3 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.9, <3.13" -content-hash = "fd6a5b3d314966e9ac7ae3cabbab82b060a27c3968ed32a0f920bd0707b3a8cf" +content-hash = "abd999dd474cd68cfb4608000e38536e4acec4ff71d3c83db676d46001aedafc" diff --git a/pyproject.toml b/pyproject.toml index 930ea1b..bff7d22 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,6 +31,7 @@ sympy = "^1.10" zarr = "^2.14" [tool.poetry.group.dev.dependencies] +deshima-rawdata = "^2023.11.3" ipython = "^8.17" [tool.poetry.scripts] diff --git a/tests/test_merge_to_dems.py b/tests/test_merge_to_dems.py index 8767b81..6bc9db4 100644 --- a/tests/test_merge_to_dems.py +++ b/tests/test_merge_to_dems.py @@ -39,7 +39,7 @@ def test_short_measure(self): prefix = 'testdata_short_measure' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -100,7 +100,7 @@ def test_shuttle(self): prefix = 'testdata_linear_antenna' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -139,7 +139,7 @@ def test_still(self): prefix = 'testdata' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -173,7 +173,7 @@ def test_find_R_linear_inc(self): prefix = 'testdata_linear_inc' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -210,7 +210,7 @@ def test_find_R_linear_dec(self): prefix = 'testdata_linear_dec' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -256,7 +256,7 @@ def test_merge_to_dems(self): dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -426,7 +426,7 @@ def test_no_cabin_file(self): prefix = 'testdata' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -441,7 +441,7 @@ def test_no_misti_file(self): prefix = 'testdata' dems = mtd.merge_to_dems( ddbfits_path='{}_DDB.fits.gz'.format(prefix), - obsinst_path='../data/cosmos/cosmos_{0}/{0}.obs'.format(self.obsid), + obsinst_path='../data/cosmos_{0}/{0}.obs'.format(self.obsid), antenna_path='{}.ant'.format(prefix), readout_path='{}_reduced_readout.fits'.format(prefix), skychop_path='{}.skychop'.format(prefix), @@ -457,7 +457,7 @@ def test_no_misti_file(self): def test_retrieve_cabin_temps(self): """cabinの温度をロードする""" - datetimes, upper, lower = mf.retrieve_cabin_temps('../data/cosmos/cosmos_20171103184436/20171103184436.cabin') + datetimes, upper, lower = mf.retrieve_cabin_temps('../data/cosmos_{0}/{0}.cabin'.format(self.obsid)) self.assertEqual(4, len(datetimes), '時刻の行数を確認') self.assertEqual(4, len(upper), 'upper_cabin_tempの行数を確認') self.assertEqual(4, len(lower), 'lower_cabin_tempの行数を確認') @@ -482,7 +482,7 @@ def test_retrieve_cabin_temps(self): return def test_retrieve_skychop_states(self): - datetimes, states = mf.retrieve_skychop_states('../data/cosmos/cosmos_20171103184436/20171103184436.skychop') + datetimes, states = mf.retrieve_skychop_states('../data/cosmos_{0}/{0}.skychop'.format(self.obsid)) self.assertEqual(192201, len(datetimes)) self.assertEqual(192201, len(states)) self.assertEqual(1509734678.900000, datetimes[0]) @@ -498,7 +498,7 @@ def test_retrieve_skychop_states(self): return def test_retrieve_misti_log(self): - time, az, el, pwv = mf.retrieve_misti_log('../data/cosmos/cosmos_20171103184436/20171103184436.misti') + time, az, el, pwv = mf.retrieve_misti_log('../data/cosmos_{0}/{0}.misti'.format(self.obsid)) self.assertEqual(1848, len(time), 'mistiファイルの行数を確認') expected = np.array([datetime(2017, 11, 3, hour=18, minute=44, second=38, microsecond=900000)]).astype('datetime64[ns]') self.assertEqual(expected[0], time[0], '時刻が正しいことを確認')