clij12xAPIcomparison.md

CLIJ 1/2/x API comparison

CLIJ1 methods not part of CLIJ2

• CLIJ_detectMaximaSliceBySliceBox(Image source, Image destination, Number radius)
• CLIJ_detectMinimaSliceBySliceBox(Image source, Image destination, Number radius)
• CLIJ_maximumXYZProjection(Image source, Image destination_max, Number dimensionX, Number dimensionY, Number projectedDimension)
• CLIJ_resliceRadial(Image source, Image destination, Number numberOfAngles, Number angleStepSize)
• CLIJ_scale(Image source, Image destination, Number scaling_factor, Boolean scale_to_center)
• CLIJ_scale2D(Image source, Image destination, Number scaling_factor, Boolean scale_to_center)
• CLIJ_scale3D(Image source, Image destination, Number scaling_factor, Boolean scale_to_center)

7 methods listed.

CLIJ2 methods not part of CLIJ1

• CLIJ2_GPUProperties()
• CLIJ2_absoluteDifference(Image source1, Image source2, ByRef Image destination)
• CLIJ2_adjacencyMatrixToTouchMatrix(Image adjacency_matrix, ByRef Image touch_matrix)
• CLIJ2_averageDistanceOfNClosestPoints(Image distance_matrix, ByRef Image distance_list_destination, Number nClosestPointsTofind)
• CLIJ2_averageDistanceOfNFarOffPoints(Image distance_matrix, ByRef Image distance+_list_destination, Number nFarOffPointsTofind)
• CLIJ2_averageDistanceOfTouchingNeighbors(Image distance_matrix, Image touch_matrix, ByRef Image average_distancelist_destination)
• CLIJ2_binaryEdgeDetection(Image source, ByRef Image destination)
• CLIJ2_binaryFillHoles(Image source, ByRef Image destination)
• CLIJ2_binaryImageMoments3D(Image binary_input, ByRef Image moments)
• CLIJ2_binaryIntersection(Image operand1, Image operand2, ByRef Image destination)
• CLIJ2_binarySubtract(Image minuend, Image subtrahend, ByRef Image destination)
• CLIJ2_binaryUnion(Image operand1, Image operand2, ByRef Image destination)
• CLIJ2_bottomHatBox(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJ2_bottomHatSphere(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJ2_boundingBox(Image source)
• CLIJ2_centroidsOfLabels(Image source, ByRef Image pointlist_destination)
• CLIJ2_closeIndexGapsInLabelMap(Image labeling_input, ByRef Image labeling_destination)
• CLIJ2_closingBox(Image input, ByRef Image destination, Number number_of_dilations_and_erosions)
• CLIJ2_closingDiamond(Image input, ByRef Image destination, Number number_of_dilations_and_erotions)
• CLIJ2_combineHorizontally(Image stack1, Image stack2, ByRef Image destination)
• CLIJ2_combineVertically(Image stack1, Image stack2, ByRef Image destination)
• CLIJ2_concatenateStacks(Image stack1, Image stack2, ByRef Image destination)
• CLIJ2_connectedComponentsLabeling(Image binary_input, ByRef Image labeling_destination)
• CLIJ2_connectedComponentsLabelingBox(Image binary_input, ByRef Image labeling_destination)
• CLIJ2_connectedComponentsLabelingDiamond(Image binary_input, ByRef Image labeling_destination)
• CLIJ2_convolve(Image source, Image convolution_kernel, Image destination)
• CLIJ2_countNonZeroPixels(Image source)
• CLIJ2_countTouchingNeighbors(Image touch_matrix, ByRef Image touching_neighbors_count_destination)
• CLIJ2_customOperation(String operation_code, String global_code, Array image_parameters)
• CLIJ2_depthColorProjection(Image source, Image lookup_table, ByRef Image destination_max, Number min_display_intensity, Number max_display_intensity)
• CLIJ2_detectLabelEdges(Image label_map, ByRef Image edge_image_destination)
• CLIJ2_detectMaxima2DBox(Image source, ByRef Image destination, Number radiusX, Number radiusY)
• CLIJ2_detectMaxima3DBox(Image source, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJ2_detectMaximaSliceBySliceBox(Image source, ByRef Image destination, Number radiusX, Number radiusY)
• CLIJ2_detectMinima2DBox(Image source, ByRef Image destination, Number radiusX, Number radiusY)
• CLIJ2_detectMinima3DBox(Image source, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJ2_detectMinimaSliceBySliceBox(Image source, ByRef Image destination, Number radiusX, Number RadiusY)
• CLIJ2_differenceOfGaussian2D(Image input, ByRef Image destination, Number sigma1x, Number sigma1y, Number sigma2x, Number sigma2y)
• CLIJ2_differenceOfGaussian3D(Image input, ByRef Image destination, Number sigma1x, Number sigma1y, Number sigma1z, Number sigma2x, Number sigma2y, Number sigma2z)
• CLIJ2_distanceMap(Image source, ByRef Image destination)
• CLIJ2_distanceMatrixToMesh(Image pointlist, Image distance_matrix, ByRef Image mesh_destination, Number maximum_distance)
• CLIJ2_drawBox(ByRef Image destination, Number x, Number y, Number z, Number width, Number height, Number depth, Number value)
• CLIJ2_drawLine(ByRef Image destination, Number x1, Number y1, Number z1, Number x2, Number y2, Number z2, Number thickness, Number value)
• CLIJ2_drawSphere(ByRef Image destination, Number x, Number y, Number z, Number radius_x, Number radius_y, Number radius_z, Number value)
• CLIJ2_entropyBox(Image input, ByRef Image destination, Number radiusX, number radiusY, Number radiusZ)
• CLIJ2_equal(Image source1, Image source2, ByRef Image destination)
• CLIJ2_equalConstant(Image source, ByRef Image destination, Number constant)
• CLIJ2_equalizeMeanIntensitiesOfSlices(Image input, ByRef Image destination, Number referenceSlice)
• CLIJ2_excludeLabels(Image binary_flaglist, Image label_map_input, ByRef Image label_map_destination)
• CLIJ2_excludeLabelsOnEdges(Image label_map_input, ByRef Image label_map_destination)
• CLIJ2_excludeLabelsOnSurface(Image pointlist, Image label_map_input, ByRef Image label_map_destination, Number centerX, Number centerY, Number centerZ)
• CLIJ2_excludeLabelsSubSurface(Image pointlist, Image label_map_input, ByRef Image label_map_destination, Number centerX, Number centerY, Number centerZ)
• CLIJ2_excludeLabelsWithValuesOutOfRange(Image values_vector, Image label_map_input, ByRef Image label_map_destination, Number minimum_value_range, Number maximum_value_range)
• CLIJ2_excludeLabelsWithValuesWithinRange(Image values_vector, Image label_map_input, ByRef Image label_map_destination, Number minimum_value_range, Number maximum_value_range)
• CLIJ2_exponential(Image source, ByRef Image destination)
• CLIJ2_floodFillDiamond(Image source, ByRef Image destination, Number value_to_replace, Number value_replacement)
• CLIJ2_gaussianBlur2D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY)
• CLIJ2_gaussianBlur3D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJ2_generateBinaryOverlapMatrix(Image label_map1, Image label_map2, ByRef Image touch_matrix_destination)
• CLIJ2_generateDistanceMatrix(Image coordinate_list1, Image coordinate_list2, ByRef Image distance_matrix_destination)
• CLIJ2_generateJaccardIndexMatrix(Image label_map1, Image label_map2, ByRef Image jaccard_index_matrix_destination)
• CLIJ2_generateParametricImage(Image label_map, Image parameter_value_vector, ByRef Image parametric_image_destination)
• CLIJ2_generateParametricImageFromResultsTableColumn(Image label_map, ByRef Image parametric_image_destination, String column)
• CLIJ2_generateTouchCountMatrix(Image label_map, ByRef Image touch_count_matrix_destination)
• CLIJ2_generateTouchMatrix(Image label_map, ByRef Image touch_matrix_destination)
• CLIJ2_getAutomaticThreshold(Image input, String method, ByRef Number threshold_value)
• CLIJ2_getBinaryImageAspectRatio3D(Image binary_input, ByRef Number aspect_ratio)
• CLIJ2_getBinaryImageEigenValues3D(Image binary_input, ByRef Number eigen_value_x, ByRef Number eigen_value_y, ByRef Number eigen_value_z)
• CLIJ2_getBoundingBox(Image source, ByRef Number boundingBoxX, ByRef Number boundingBoxY, ByRef Number boundingBoxZ, ByRef Number boundingBoxWidth, ByRef Number boundingBoxHeight, ByRef Number boundingBoxDepth)
• CLIJ2_getCenterOfMass(Image source, ByRef Number centerOfMassX, ByRef Number centerOfMassY, ByRef Number centerOfMassZ)
• CLIJ2_getDimensions(Image source, ByRef Number width, ByRef Number height, ByRef Number depth)
• CLIJ2_getGPUProperties(ByRef String GPU_name, ByRef Number global_memory_in_bytes, ByRef Number OpenCL_version)
• CLIJ2_getJaccardIndex(Image source1, Image source2, ByRef Number jaccard_index)
• CLIJ2_getMaximumOfAllPixels(Image source, ByRef Number maximum_of_all_pixels)
• CLIJ2_getMeanOfAllPixels(Image source, ByRef Number mean_of_all_pixels)
• CLIJ2_getMeanSquaredError(Image source1, Image source2, ByRef Number mean_squared_error)
• CLIJ2_getMinimumOfAllPixels(Image source, ByRef Number minimum_of_all_pixels)
• CLIJ2_getSize(Image source)
• CLIJ2_getSorensenDiceCoefficient(Image source1, Image source2, ByRef Number sorensen_dice_coefficient)
• CLIJ2_getSumOfAllPixels(Image source, ByRef Number sum_of_all_pixels)
• CLIJ2_getTimeTracing(ByRef String time_traces)
• CLIJ2_greater(Image source1, Image source2, ByRef Image destination)
• CLIJ2_greaterConstant(Image source, ByRef Image destination, Number constant)
• CLIJ2_greaterOrEqual(Image source1, Image source2, ByRef Image destination)
• CLIJ2_greaterOrEqualConstant(Image source, ByRef Image destination, Number constant)
• CLIJ2_image2DToResultsTable(Image source)
• CLIJ2_imageToStack(Image source, ByRef Image destination, Number num_slices)
• CLIJ2_invalidateKernelCache()
• CLIJ2_jaccardIndex(Image source1, Image source2)
• CLIJ2_labelSpots(Image input_spots, ByRef Image labelled_spots_destination)
• CLIJ2_labelToMask(Image label_map_source, ByRef Image mask_destination, Number label_index)
• CLIJ2_labelVoronoiOctagon(Image label_map, ByRef Image label_voronoi_destination)
• CLIJ2_labelledSpotsToPointList(Image input_labelled_spots, ByRef Image destination_pointlist)
• CLIJ2_laplaceBox(Image input, ByRef Image destination)
• CLIJ2_laplaceDiamond(Image input, ByRef Image destination)
• CLIJ2_listAvailableGPUs()
• CLIJ2_logarithm(Image source, ByRef Image destination)
• CLIJ2_maskLabel(Image source, Image label_map, ByRef Image destination, Number label_index)
• CLIJ2_matrixEqual(Image input1, Image input2, Number tolerance)
• CLIJ2_maximumOctagon(Image input, ByRef Image destination, Number iterations)
• CLIJ2_maximumOfMaskedPixels(Image source, Image mask)
• CLIJ2_maximumOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image maximum_values_destination)
• CLIJ2_maximumXProjection(Image source, ByRef Image destination_max)
• CLIJ2_maximumYProjection(Image source, ByRef Image destination_max)
• CLIJ2_maximumZProjectionBounded(Image source, ByRef Image destination_max, Number min_z, Number max_z)
• CLIJ2_meanClosestSpotDistance(Image spotsA, Image spotsB, Boolean bidirectional)
• CLIJ2_meanOfMaskedPixels(Image source, Image mask)
• CLIJ2_meanOfPixelsAboveThreshold(Image source, Number threshold)
• CLIJ2_meanOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image mean_values_destination)
• CLIJ2_meanSquaredError(Image source1, Image source2)
• CLIJ2_meanXProjection(Image source, ByRef Image destination)
• CLIJ2_meanYProjection(Image source, ByRef Image destination)
• CLIJ2_meanZProjectionBounded(Image source, ByRef Image destination_mean, Number min_z, Number max_z)
• CLIJ2_medianOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image mean_values_destination)
• CLIJ2_medianZProjection(Image source, ByRef Image destination)
• CLIJ2_minimumDistanceOfTouchingNeighbors(Image distance_matrix, Image touch_matrix, ByRef Image minimum_distancelist_destination)
• CLIJ2_minimumOctagon(Image input, ByRef Image destination, Number iterations)
• CLIJ2_minimumOfMaskedPixels(Image source, Image mask)
• CLIJ2_minimumOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image minimum_values_destination)
• CLIJ2_minimumXProjection(Image source, ByRef Image destination_sum)
• CLIJ2_minimumYProjection(Image source, ByRef Image destination_sum)
• CLIJ2_minimumZProjectionBounded(Image source, ByRef Image destination_min, Number min_z, Number max_z)
• CLIJ2_minimumZProjectionThresholdedBounded(Image source, ByRef Image destination_min, Number min_z, Number max_z)
• CLIJ2_multiplyImageAndCoordinate(Image source, ByRef Image destination, Number dimension)
• CLIJ2_multiplyImageStackWithScalars(Image source, ByRef Image destination, Array scalars)
• CLIJ2_multiplyMatrix(Image matrix1, Image matrix2, ByRef Image matrix_destination)
• CLIJ2_nClosestDistances(Image distance_matrix, ByRef Image distances_destination, ByRef Image indexlist_destination, Number nClosestPointsTofind)
• CLIJ2_nClosestPoints(Image distance_matrix, ByRef Image indexlist_destination, Number nClosestPointsTofind)
• CLIJ2_neighborsOfNeighbors(Image touch_matrix, ByRef Image neighbor_matrix_destination)
• CLIJ2_nonzeroMaximumBox(Image input, ByRef Image destination)
• CLIJ2_nonzeroMaximumDiamond(Image input, ByRef Image destination)
• CLIJ2_nonzeroMinimumBox(Image input, ByRef Image destination)
• CLIJ2_nonzeroMinimumDiamond(Image input, ByRef Image destination)
• CLIJ2_notEqual(Image source1, Image source2, ByRef Image destination)
• CLIJ2_notEqualConstant(Image source, ByRef Image destination, Number constant)
• CLIJ2_onlyzeroOverwriteMaximumBox(Image input, ByRef Image destination)
• CLIJ2_onlyzeroOverwriteMaximumDiamond(Image input, ByRef Image destination)
• CLIJ2_openingBox(Image input, ByRef Image destination, Number number_of_erotions_and_dilations)
• CLIJ2_openingDiamond(Image input, ByRef Image destination, Number number_of_erotions_and_dilations)
• CLIJ2_paste2D(Image source, ByRef Image destination, Number destinationX, Number destinationY)
• CLIJ2_paste3D(Image source, ByRef Image destination, Number destinationX, Number destinationY, Number destinationZ)
• CLIJ2_pointIndexListToMesh(Image pointlist, Image indexList, ByRef Image mesh_destination)
• CLIJ2_pointlistToLabelledSpots(Image pointlist, ByRef Image spots_destination)
• CLIJ2_powerImages(Image input, Image exponent, ByRef Image destination)
• CLIJ2_print(Image input)
• CLIJ2_pullAsROI(Image binary_input)
• CLIJ2_pullLabelsToROIList(Image labelmap_input)
• CLIJ2_pullLabelsToROIManager(Image labelmap_input)
• CLIJ2_pullString(Image input, ByRef String output)
• CLIJ2_pullToCurrentSlice(Image input_slice, String target_image_stack)
• CLIJ2_pullToCurrentSliceSelection(Image input_slice, String target_image_stack)
• CLIJ2_pullToROIManager(Image binary_input)
• CLIJ2_pullToResultsTable(Image source)
• CLIJ2_pushArray(ByRef Image destination, Array input, Number width, Number height, Number depth)
• CLIJ2_pushCurrentSelection(String image)
• CLIJ2_pushCurrentSliceSelection(String image)
• CLIJ2_pushResultsTable(ByRef Image destination)
• CLIJ2_pushResultsTableColumn(ByRef Image destination, String column_name)
• CLIJ2_pushString(Image destination, Array input, Number width, Number height, Number depth)
• CLIJ2_reduceStack(Image input, ByRef Image destination, Number reductionFactor, Number offset)
• CLIJ2_replaceIntensities(Image input, Image new_values_vector, ByRef Image destination)
• CLIJ2_replaceIntensity(Image input, ByRef Image destination, Number oldValue, Number newValue)
• CLIJ2_replacePixelsIfZero(Image input1, Image input2, ByRef Image destination)
• CLIJ2_resample(Image source, ByRef Image destination, Number factorX, Number factorY, Number factorZ, Boolean linearInterpolation)
• CLIJ2_resliceRadial(Image source, ByRef Image destination, Number numberOfAngles, Number angleStepSize, Number startAngleDegrees, Number centerX, Number centerY, Number scaleFactorX, Number scaleFactorY)
• CLIJ2_resliceRadialTop(Image source, ByRef Image destination, Number numberOfAngles, Number angleStepSize, Number startAngleDegrees, Number centerX, Number centerY, Number scaleFactorX, Number scaleFactorY)
• CLIJ2_resultsTableColumnToImage(ByRef Image destination, String column_name)
• CLIJ2_resultsTableToImage2D(ByRef Image destination)
• CLIJ2_rotateClockwise(Image source, ByRef Image destination)
• CLIJ2_rotateCounterClockwise(Image source, ByRef Image destination)
• CLIJ2_saveAsTIF(Image input, String filename)
• CLIJ2_scale(Image source, ByRef Image destination, Number scaling_factor_x, Number scaling_factor_y, Number scaling_factor_z, Boolean scale_to_center)
• CLIJ2_scale2D(Image source, ByRef Image destination, Number scaling_factor_x, Number scaling_factor_y, Boolean scale_to_center)
• CLIJ2_scale3D(Image source, ByRef Image destination, Number scaling_factor_x, Number scaling_factor_y, Number scaling_factor_z, Boolean scale_to_center)
• CLIJ2_setColumn(Image source, Number columnIndex, Number value)
• CLIJ2_setImageBorders(Image destination, Number value)
• CLIJ2_setNonZeroPixelsToPixelIndex(Image source, Image destination)
• CLIJ2_setPlane(Image source, Number rowIndex, Number value)
• CLIJ2_setRampX(Image source)
• CLIJ2_setRampY(Image source)
• CLIJ2_setRampZ(Image source)
• CLIJ2_setRandom(Image source, Number minimumValue, Number maximumValue, Number seed)
• CLIJ2_setRow(Image source, Number rowIndex, Number value)
• CLIJ2_setWhereXequalsY(Image source, Number value)
• CLIJ2_setWhereXgreaterThanY(Image source, Number value)
• CLIJ2_setWhereXsmallerThanY(Image source, Number value)
• CLIJ2_shortestDistances(Image distance_matrix, ByRef Image destination_minimum_distances)
• CLIJ2_smaller(Image source1, Image source2, ByRef Image destination)
• CLIJ2_smallerConstant(Image source, ByRef Image destination, Number constant)
• CLIJ2_smallerOrEqual(Image source1, Image source2, ByRef Image destination)
• CLIJ2_smallerOrEqualConstant(Image source, ByRef Image destination, Number constant)
• CLIJ2_sobel(Image source, ByRef Image destination)
• CLIJ2_sorensenDiceCoefficient(Image source1, Image source2)
• CLIJ2_spotsToPointList(Image input_spots, ByRef Image destination_pointlist)
• CLIJ2_squaredDifference(Image source1, Image source2, ByRef Image destination)
• CLIJ2_standardDeviationOfAllPixels(Image source)
• CLIJ2_standardDeviationOfMaskedPixels(Image source, Image mask)
• CLIJ2_standardDeviationOfTouchingNeighbors(Image values, Image touch_matrix, ByRef Image standard_deviation_values_destination)
• CLIJ2_standardDeviationZProjection(Image source, ByRef Image destination)
• CLIJ2_startTimeTracing()
• CLIJ2_statisticsOfBackgroundAndLabelledPixels(Image input, Image labelmap)
• CLIJ2_statisticsOfImage(Image input)
• CLIJ2_statisticsOfLabelledPixels(Image input, Image labelmap)
• CLIJ2_stopTimeTracing()
• CLIJ2_subtractImageFromScalar(Image input, ByRef Image destination, Number scalar)
• CLIJ2_sumImageSliceBySlice(Image source, ByRef Image destination)
• CLIJ2_sumXProjection(Image source, ByRef Image destination)
• CLIJ2_sumYProjection(Image source, ByRef Image destination)
• CLIJ2_thresholdDefault(Image input, ByRef Image destination)
• CLIJ2_thresholdHuang(Image input, ByRef Image destination)
• CLIJ2_thresholdIJ_IsoData(Image input, ByRef Image destination)
• CLIJ2_thresholdIntermodes(Image input, ByRef Image destination)
• CLIJ2_thresholdIsoData(Image input, ByRef Image destination)
• CLIJ2_thresholdLi(Image input, ByRef Image destination)
• CLIJ2_thresholdMaxEntropy(Image input, ByRef Image destination)
• CLIJ2_thresholdMean(Image input, ByRef Image destination)
• CLIJ2_thresholdMinError(Image input, ByRef Image destination)
• CLIJ2_thresholdMinimum(Image input, ByRef Image destination)
• CLIJ2_thresholdMoments(Image input, ByRef Image destination)
• CLIJ2_thresholdOtsu(Image input, ByRef Image destination)
• CLIJ2_thresholdPercentile(Image input, ByRef Image destination)
• CLIJ2_thresholdRenyiEntropy(Image input, ByRef Image destination)
• CLIJ2_thresholdShanbhag(Image input, ByRef Image destination)
• CLIJ2_thresholdTriangle(Image input, ByRef Image destination)
• CLIJ2_thresholdYen(Image input, ByRef Image destination)
• CLIJ2_topHatBox(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJ2_topHatSphere(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJ2_touchMatrixToAdjacencyMatrix(Image touch_matrix, ByRef Image adjacency_matrix)
• CLIJ2_touchMatrixToMesh(Image pointlist, Image touch_matrix, ByRef Image mesh_destination)
• CLIJ2_transposeXY(Image input, ByRef Image destination)
• CLIJ2_transposeXZ(Image input, ByRef Image destination)
• CLIJ2_transposeYZ(Image input, ByRef Image destination)
• CLIJ2_undefinedToZero(Image source, ByRef Image destination)
• CLIJ2_varianceOfAllPixels(Image source)
• CLIJ2_varianceOfMaskedPixels(Image source, Image mask)
• CLIJ2_voronoiLabeling(Image input, ByRef Image destination)
• CLIJ2_voronoiOctagon(Image input, ByRef Image destination)
• CLIJ2_watershed(Image binary_source, ByRef Image destination)
• CLIJ2_writeValuesToPositions(Image positionsAndValues, ByRef Image destination)

239 methods listed.

CLIJx methods not part of CLIJ2

• CLIJx_absoluteInplace(Image source_destination)
• CLIJx_applyAutoContextWekaModel(Image input, Image destination_prediction, String model_filename, String feature_definitions, Number numberOfAutoContextIterations)
• CLIJx_applyWekaModel(Image featureStack3D, Image prediction2D_destination, String loadModelFilename)
• CLIJx_applyWekaToTable(String predictionColumnName, String loadModelFilename)
• CLIJx_automaticThresholdInplace(Image input_and_destination, String method)
• CLIJx_averageAngleBetweenAdjacentTriangles(Image pointlist, Image touch_matrix, ByRef Image average_distancelist_destination)
• CLIJx_bilateral(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ, Number sigma_intensity, Number sigma_space)
• CLIJx_blurBuffers3D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_blurImages3D(Image source, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_blurInplace3D(Image source_and_destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_blurSliceBySlice(Image source, ByRef Image destination, Number sigmaX, Number sigmaY)
• CLIJx_captureWebcamImage(ByRef Image destination, Number cameraDeviceIndex, Number imageWidth, Number imageHeight)
• CLIJx_connectedComponentsLabelingInplace(Image binary_source_labeling_destination)
• CLIJx_convertRGBStackToGraySlice(Image stack_source, ByRef Image slice_destination)
• CLIJx_crossCorrelation(Image input1, Image meanInput1, Image input2, Image meanInput2, ByRef Image destination, Number radius, Number deltaPos, Number dimension)
• CLIJx_customBinaryOperation(Image image1, Image image2, String opencl_code)
• CLIJx_deformableRegistration2D(Image input1, Image input2, ByRef Image destination, Number maxDeltaX, Number maxDeltaY)
• CLIJx_differenceOfGaussianInplace3D(Image input_and_destination, Number sigma1x, Number sigma1y, Number sigma1z, Number sigma2x, Number sigma2y, Number sigma2z)
• CLIJx_drawTwoValueLine(ByRef Image destination, Number x1, Number y1, Number z1, Number x2, Number y2, Number z2, Number thickness, Number value1, Number value2)
• CLIJx_extrema(Image input1, Image input2, ByRef Image destination)
• CLIJx_fastParticleImageVelocimetry(Image source1, Image source2, Image destinationDeltaX, Image destinationDeltaY, Number maxDelta)
• CLIJx_gaussJordan(Image A_matrix, Image B_result_vector, ByRef Image solution_destination)
• CLIJx_generateFeatureStack(Image input, Image feature_stack_destination, String feature_definitions)
• CLIJx_laplaceSphere(Image input, ByRef Image destination)
• CLIJx_lfrecon(Image input, ByRef Image destination, Number umax, Number vmax)
• CLIJx_listWebcams()
• CLIJx_localExtremaBox(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ)
• CLIJx_localID(Image input, ByRef Image destination)
• CLIJx_nonLocalMeans(Image input, ByRef Image destination, Number radiusX, Number radiusY, Number radiusZ, Number sigma)
• CLIJx_organiseWindows(Number startX, Number startY, Number tilesX, Number tilesY, Number tileWidth, Number tileHeight)
• CLIJx_particleImageVelocimetry(Image source1, Image source2, Image destinationDeltaX, Image destinationDeltaY, Image destinationDeltaZ, Number maxDeltaX, Number maxDeltaY, Number maxDeltaZ, Boolean correctLocalShift)
• CLIJx_particleImageVelocimetryTimelapse(Image source, Image destinationDeltaX, Image destinationDeltaY, Image destinationDeltaZ, Number maxDeltaX, Number maxDeltaY, Number maxDeltaZ, Boolean correctLocalShift)
• CLIJx_popMetaData()
• CLIJx_preloadFromDisc(Image destination, String filename, String nextFilename, String loaderId)
• CLIJx_presign(Image input, ByRef Image destination)
• CLIJx_pullArray(Image input, ByRef Array destination)
• CLIJx_pullTile(String image, Number tileIndexX, Number tileIndexY, Number tileIndexZ, Number width, Number height, Number depth, Number marginWidth, Number marginHeight, Number marginDepth)
• CLIJx_pushMetaData()
• CLIJx_pushTile(String image, Number tileIndexX, Number tileIndexY, Number tileIndexZ, Number width, Number height, Number depth, Number marginWidth, Number marginHeight, Number marginDepth)
• CLIJx_readImageFromDisc(Image destination, String filename)
• CLIJx_readRawImageFromDisc(Image destination, String filename, Number width, Number height, Number depth, Number bitsPerPixel)
• CLIJx_resetMetaData()
• CLIJx_show3DWithTipTilt(Image input, String title, Boolean synchronised_windows)
• CLIJx_showGlasbeyOnGrey(Image red, Image labelling, String title)
• CLIJx_showGrey(Image input, String title)
• CLIJx_showGreyAsync(Image input, String title)
• CLIJx_showRGB(Image red, Image green, Image blue, String title)
• CLIJx_skeletonize(Image source, ByRef Image destination)
• CLIJx_splitStackInto10( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6, Image destination7, Image destination8, Image destination9, Image destination10)
• CLIJx_splitStackInto11( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6, Image destination7, Image destination8, Image destination9, Image destination10, Image destination11)
• CLIJx_splitStackInto12( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6, Image destination7, Image destination8, Image destination9, Image destination10, Image destination11, Image destination12)
• CLIJx_splitStackInto2( Image source, Image destination1, Image destination2)
• CLIJx_splitStackInto3( Image source, Image destination1, Image destination2, Image destination3)
• CLIJx_splitStackInto4( Image source, Image destination1, Image destination2, Image destination3, Image destination4)
• CLIJx_splitStackInto5( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5)
• CLIJx_splitStackInto6( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6)
• CLIJx_splitStackInto7( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6, Image destination7)
• CLIJx_splitStackInto8( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6, Image destination7, Image destination8)
• CLIJx_splitStackInto9( Image source, Image destination1, Image destination2, Image destination3, Image destination4, Image destination5, Image destination6, Image destination7, Image destination8, Image destination9)
• CLIJx_stackToTiles(Image source, ByRef Image destination, Number tiles_x, Number tiles_y)
• CLIJx_startContinuousWebcamAcquisition(Number cameraDeviceIndex, Number imageWidth, Number imageHeight)
• CLIJx_stopContinuousWebcamAcquisition(Number cameraDeviceIndex)
• CLIJx_stopWatch(String text)
• CLIJx_subtractBackground2D(Image input, ByRef Image destination, Number sigmaX, Number sigmaY)
• CLIJx_subtractBackground3D(Image input, ByRef Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusion(Image input, Image destination, Number number_of_substacks, Number sigmaX, Number sigmaY, Number sigmaZ, Number exponent)
• CLIJx_tenengradFusionOf10(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image source7, Image source8, Image source9, Image source10, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf11(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image source7, Image source8, Image source9, Image source10, Image source11, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf12(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image source7, Image source8, Image source9, Image source10, Image source11, Image source12, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf2(Image source1, Image source2, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf3(Image source1, Image source2, Image source3, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf4(Image source1, Image source2, Image source3, Image source4, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf5(Image source1, Image source2, Image source3, Image source4, Image source5, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf6(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf7(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image source7, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf8(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image source7, Image source8, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_tenengradFusionOf9(Image source1, Image source2, Image source3, Image source4, Image source5, Image source6, Image source7, Image source8, Image source9, Image destination, Number sigmaX, Number sigmaY, Number sigmaZ)
• CLIJx_topHatOctagon(Image input, ByRef Image destination, Number iterations)
• CLIJx_topHatOctagonSliceBySlice(Image input, ByRef Image destination, Number iterations)
• CLIJx_trainAutoContextWekaModel(Image input, Image ground_truth, String model_filename, String feature_definitions, Number numberOfAutoContextIterations, Number numberOfTrees, Number numberOfFeatures, Number maxDepth)
• CLIJx_trainWekaFromTable(String groundTruthColumnName, String saveModelFilename, Number trees, Number features, Number maxDepth)
• CLIJx_trainWekaModel(Image featureStack3D, Image groundTruth2D, String saveModelFilename)
• CLIJx_trainWekaModelWithOptions(Image featureStack3D, Image groundTruth2D, String saveModelFilename, Number trees, Number features, Number maxDepth)
• CLIJx_translationRegistration(Image input1, Image input2, ByRef Image destination)
• CLIJx_translationTimelapseRegistration(Image input, ByRef Image output)
• CLIJx_writeVTKLineListToDisc(Image pointlist, Image touch_matrix, String filename)
• CLIJx_writeXYZPointListToDisc(Image pointlist, String filename)

87 methods listed.