appinfo.json

{
  "files": [
    "/code/OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_2mm_v2.nii.gz", 
    "/code/OASIS-30_Atropos_template_in_MNI152_2mm.nii.gz", 
    "/opt/ants/antsApplyTransforms", 
    "/opt/ants/antsRegistration", 
    "/opt2/c3d-1.0.0-Linux-x86_64/bin/c3d_affine_tool", 
    "/opt2/freesurfer/.license", 
    "/opt2/freesurfer/FreeSurferColorLUT.txt", 
    "/opt2/freesurfer/bin/bbregister", 
    "/opt2/freesurfer/bin/flirt.fsl", 
    "/opt2/freesurfer/bin/flirt.newdefault.20080811.sch", 
    "/opt2/freesurfer/bin/fname2stem", 
    "/opt2/freesurfer/bin/fslregister", 
    "/opt2/freesurfer/bin/mri_binarize", 
    "/opt2/freesurfer/bin/mri_convert", 
    "/opt2/freesurfer/bin/mri_info", 
    "/opt2/freesurfer/bin/mri_segreg", 
    "/opt2/freesurfer/bin/mri_segstats", 
    "/opt2/freesurfer/bin/mri_vol2surf", 
    "/opt2/freesurfer/bin/mri_vol2vol", 
    "/opt2/freesurfer/bin/stem2fname", 
    "/opt2/freesurfer/bin/tkregister2_cmdl", 
    "/opt2/freesurfer/build-stamp.txt", 
    "/opt2/freesurfer/subjects/fsaverage5/mri/transforms/talairach.xfm", 
    "/opt2/freesurfer/subjects/fsaverage5/surf/lh.sphere.reg", 
    "/opt2/freesurfer/subjects/fsaverage5/surf/lh.white", 
    "/opt2/freesurfer/subjects/fsaverage5/surf/lh.white.avg.area.mgh", 
    "/opt2/freesurfer/subjects/fsaverage5/surf/rh.sphere.reg", 
    "/opt2/freesurfer/subjects/fsaverage5/surf/rh.white", 
    "/opt2/freesurfer/subjects/fsaverage5/surf/rh.white.avg.area.mgh", 
    "/opt2/freesurfer/tktools/tkregister2.tcl", 
    "/usr/lib/fsl/5.0/bet", 
    "/usr/lib/fsl/5.0/bet2", 
    "/usr/lib/fsl/5.0/fast", 
    "/usr/lib/fsl/5.0/fsl_glm", 
    "/usr/lib/fsl/5.0/fslmaths", 
    "/usr/lib/fsl/5.0/imtest", 
    "/usr/lib/fsl/5.0/libfslio.so", 
    "/usr/lib/fsl/5.0/libmeshclass.so", 
    "/usr/lib/fsl/5.0/libmiscmaths.so", 
    "/usr/lib/fsl/5.0/libnewimage.so", 
    "/usr/lib/fsl/5.0/libprob.so", 
    "/usr/lib/fsl/5.0/libutils.so", 
    "/usr/lib/fsl/5.0/remove_ext", 
    "/usr/share/fsl/5.0/etc/flirtsch/xyztrans.sch", 
    "/usr/share/fsl/5.0/etc/fslversion"
  ], 
  "environ": {
    "FSLDIR": "/usr/share/fsl/5.0", 
    "POSSUMDIR": "/usr/share/fsl/5.0", 
    "FSLREMOTECALL": "", 
    "FSL_BIN": "/usr/share/fsl/5.0/bin", 
    "PATH": "/opt2/freesurfer/bin:/opt2/freesurfer/fsfast/bin:/opt2/freesurfer/tktools:/usr/share/fsl/5.0/bin:/usr/lib/fsl/5.0:/opt2/freesurfer/mni/bin:/opt2/c3d-1.0.0-Linux-x86_64/bin:/usr/local/miniconda/envs/nipypetests-2.7/bin:/opt/ants:/opt/ants:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/lib/afni/bin", 
    "LD_LIBRARY_PATH": "/usr/lib/fsl/5.0", 
    "FSLLOCKDIR": "", 
    "FMRI_ANALYSIS_DIR": "/opt2/freesurfer/fsfast", 
    "FSLBROWSER": "/etc/alternatives/x-www-browser", 
    "FSL_DIR": "/usr/share/fsl/5.0", 
    "FREESURFER_HOME": "/opt2/freesurfer", 
    "MNI_PERL5LIB": "/opt2/freesurfer/mni/lib/perl5/5.8.5", 
    "FSLWISH": "/usr/bin/wish", 
    "MINC_BIN_DIR": "/opt2/freesurfer/mni/bin", 
    "FSLOUTPUTTYPE": "NIFTI_GZ", 
    "FSFAST_HOME": "/opt2/freesurfer/fsfast", 
    "SUBJECTS_DIR": "/opt2/freesurfer/subjects", 
    "MINC_LIB_DIR": "/opt2/freesurfer/mni/lib", 
    "PERL5LIB": "/opt2/freesurfer/mni/lib/perl5/5.8.5", 
    "FSLMACHINELIST": "", 
    "FSLMULTIFILEQUIT": "TRUE", 
    "OLDPWD": "/opt2/freesurfer", 
    "FSLTCLSH": "/usr/bin/tclsh", 
    "MNI_DATAPATH": "/opt2/freesurfer/mni/data", 
    "MNI_DIR": "/opt2/freesurfer/mni", 
    "LOCAL_DIR": "/opt2/freesurfer/local", 
    "FUNCTIONALS_DIR": "/opt2/freesurfer/sessions"
  }
}